View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0903_low_52 (Length: 208)
Name: NF0903_low_52
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0903_low_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 45269305 - 45269141
Alignment:
| Q |
44 |
aacaatctataactcaaattggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttcgctcgaggaattttg |
143 |
Q |
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| T |
45269305 |
aacaatctataactcaaattggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttcgctcgaggaattttg |
45269206 |
T |
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| Q |
144 |
ttagccatgaagaagtagcttaacataaaagtataaaaccttatgaatgactgagtagtgagtac |
208 |
Q |
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| T |
45269205 |
ttagccattaagaagtagcttaacataaaagtataaaaccttatgaatgactgagtagtgagtac |
45269141 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 37704515 - 37704473
Alignment:
| Q |
10 |
aacaaaataagggaatacgtagactcaatttgcaaacaatcta |
52 |
Q |
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| T |
37704515 |
aacaaaataagggaatacgtagactcaatttgcaaacaatcta |
37704473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 37698698 - 37698655
Alignment:
| Q |
9 |
caacaaaataagggaatacgtagactcaatttgcaaacaatcta |
52 |
Q |
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| T |
37698698 |
caacaaaataagggaatacttagactcaatttgtaaacaatcta |
37698655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 16867577 - 16867523
Alignment:
| Q |
64 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
118 |
Q |
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| T |
16867577 |
ggcttacaagttttccttcatgaagattttgagcaagtatgatcttgaaaaagtg |
16867523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 16872337 - 16872283
Alignment:
| Q |
64 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
118 |
Q |
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| T |
16872337 |
ggcttacaagctttccttcatgaagattttgagcaagtattatcttgaaaaagtg |
16872283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16862187 - 16862123
Alignment:
| Q |
64 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttc |
128 |
Q |
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| T |
16862187 |
ggcttacaagctttccttcctgaagattttgagcaagtattatcttgaaaaagtggattggcttc |
16862123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 17605112 - 17605064
Alignment:
| Q |
64 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaa |
112 |
Q |
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| T |
17605112 |
ggcttacaaggtttccttggagaaggttttgagcaagtatgatcttgaa |
17605064 |
T |
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