View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0903_low_8 (Length: 408)

Name: NF0903_low_8
Description: NF0903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0903_low_8
NF0903_low_8
[»] chr7 (14 HSPs)
chr7 (72-275)||(46516904-46517107)
chr7 (74-275)||(46524611-46524812)
chr7 (72-264)||(46322745-46322937)
chr7 (280-382)||(46512144-46512246)
chr7 (74-271)||(46479119-46479316)
chr7 (74-271)||(46520549-46520746)
chr7 (74-264)||(46532175-46532365)
chr7 (281-382)||(46165564-46165665)
chr7 (77-260)||(46326455-46326638)
chr7 (74-264)||(46490328-46490518)
chr7 (72-260)||(46494630-46494818)
chr7 (294-348)||(28214848-28214902)
chr7 (292-365)||(5959883-5959956)
chr7 (295-365)||(4127828-4127898)
[»] chr1 (6 HSPs)
chr1 (280-382)||(19870612-19870714)
chr1 (280-382)||(48987147-48987249)
chr1 (327-382)||(25488280-25488335)
chr1 (294-348)||(8146242-8146296)
chr1 (280-328)||(25487778-25487826)
chr1 (72-124)||(37152139-37152191)
[»] scaffold0137 (1 HSPs)
scaffold0137 (294-371)||(11701-11778)
[»] chr3 (3 HSPs)
chr3 (294-371)||(3904846-3904923)
chr3 (176-264)||(7475308-7475396)
chr3 (294-382)||(49572947-49573035)
[»] scaffold0522 (1 HSPs)
scaffold0522 (294-348)||(5632-5686)
[»] chr2 (1 HSPs)
chr2 (292-366)||(29760549-29760623)
[»] scaffold0402 (1 HSPs)
scaffold0402 (292-365)||(14224-14297)
[»] chr8 (1 HSPs)
chr8 (292-365)||(17939646-17939719)
[»] chr6 (1 HSPs)
chr6 (292-365)||(6827665-6827738)
[»] chr4 (2 HSPs)
chr4 (292-365)||(36383408-36383481)
chr4 (72-124)||(88039-88091)
[»] chr5 (1 HSPs)
chr5 (294-382)||(5358427-5358515)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 46517107 - 46516904
Alignment:
Q  72 agcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46517107 agcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctg 46517008  T
Q  172 gtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46517007 gtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttca 46516908  T
Q  272 gtta 275  Q
    ||||    
T  46516907 gtta 46516904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 74 - 275
Target Start/End: Complemental strand, 46524812 - 46524611
Alignment:
Q  74 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 173  Q
    ||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||  | || |||||||||||||| || || ||| ||||||    
T  46524812 cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt 46524713  T
Q  174 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttcagt 273  Q
    | |||||||||||||||||||| |||||||||||||| ||||||||  | || ||||| |||||||||||||| |||||||| ||||||||  |||||||    
T  46524712 attcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagt 46524613  T
Q  274 ta 275  Q
    ||    
T  46524612 ta 46524611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 46322745 - 46322937
Alignment:
Q  72 agcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctg 171  Q
    ||||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||  | || ||||||||||| || ||||||||| ||||    
T  46322745 agcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctg 46322844  T
Q  172 gtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 264  Q
    |||||| ||||||||||||||||  |||||| |||| || ||||||||| |||| ||||| ||||| |||||||| ||||||||||| |||||    
T  46322845 gtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc 46322937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 280 - 382
Target Start/End: Complemental strand, 46512246 - 46512144
Alignment:
Q  280 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc 379  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46512246 caggatgcacaacgcgtatgattatttcacttgatcgaaagatagggaaatataagtttgttgactttgaagctcaacataaccaccttcttcttccacc 46512147  T
Q  380 tga 382  Q
    |||    
T  46512146 tga 46512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 46479316 - 46479119
Alignment:
Q  74 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 173  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||    
T  46479316 cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt 46479217  T
Q  174 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca 271  Q
    | ||||||||||||||||||| ||||||  ||||||| || |||||  | || ||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  46479216 attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca 46479119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 46520746 - 46520549
Alignment:
Q  74 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 173  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||    
T  46520746 cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt 46520647  T
Q  174 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca 271  Q
    | ||||||||||||||||||| ||||||  ||||||| || |||||  | || ||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  46520646 attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca 46520549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 74 - 264
Target Start/End: Complemental strand, 46532365 - 46532175
Alignment:
Q  74 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 173  Q
    |||||||||||||| ||||||||||||||||||||| | || || |||||||||||||||||  | || |||||||||||||| || || ||| ||||||    
T  46532365 cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt 46532266  T
Q  174 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 264  Q
    | |||||||||||||| ||||| |||||  ||||||| || |||||| |||| ||||||||||| |||||||| |||||||| || |||||    
T  46532265 attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc 46532175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 281 - 382
Target Start/End: Original strand, 46165564 - 46165665
Alignment:
Q  281 aggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacct 380  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  46165564 aggatgcacagcgtgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacct 46165663  T
Q  381 ga 382  Q
    ||    
T  46165664 ga 46165665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 77 - 260
Target Start/End: Original strand, 46326455 - 46326638
Alignment:
Q  77 agaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtact 176  Q
    ||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||  | || ||||||||||| || ||||||||| |||||||||    
T  46326455 agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact 46326554  T
Q  177 catggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg 260  Q
    | ||||||||||||||||  |||||| | ||||| || |||||  | || ||||| |||||||||||||| |||||||| ||||    
T  46326555 cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatg 46326638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 264
Target Start/End: Complemental strand, 46490518 - 46490328
Alignment:
Q  74 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 173  Q
    ||||||||||||||||||||||| |||||||||||| | || |||||||| |||||||||||  | ||  ||||||||||||| || |||||| ||||||    
T  46490518 cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt 46490419  T
Q  174 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 264  Q
    | ||||||||||||||||||  ||||||  ||||||| || |||||| | || ||||||||||||||||| || || ||||| ||||||||    
T  46490418 attcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc 46490328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 46494818 - 46494630
Alignment:
Q  72 agcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctg 171  Q
    |||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||  | ||  |||||||||| || || |||||| ||||    
T  46494818 agcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactctg 46494719  T
Q  172 gtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg 260  Q
    |||||| ||||||||||||||||  |||||| |||| || || |||||  | |||||||| ||||| ||||| || || || |||||||    
T  46494718 gtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatg 46494630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 28214902 - 28214848
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttg 348  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  28214902 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttg 28214848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 5959956 - 5959883
Alignment:
Q  292 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccac 365  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||    
T  5959956 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac 5959883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 4127828 - 4127898
Alignment:
Q  295 gtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccac 365  Q
    |||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||    
T  4127828 gtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac 4127898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 19870612 - 19870714
Alignment:
Q  280 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc 379  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  19870612 caggatgcacaacacgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacc 19870711  T
Q  380 tga 382  Q
    |||    
T  19870712 tga 19870714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 48987147 - 48987249
Alignment:
Q  280 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc 379  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  48987147 caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaatctcaacataaccaccttctggttccacc 48987246  T
Q  380 tga 382  Q
    |||    
T  48987247 tga 48987249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 25488280 - 25488335
Alignment:
Q  327 aaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctga 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  25488280 aaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctga 25488335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8146296 - 8146242
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttg 348  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  8146296 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttg 8146242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 25487826 - 25487778
Alignment:
Q  280 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaa 328  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25487826 caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaa 25487778  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 37152191 - 37152139
Alignment:
Q  72 agcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaagga 124  Q
    ||||||||| ||| ||||| ||||| || ||||||||||| ||||||||||||    
T  37152191 agcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagga 37152139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 11701 - 11778
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctt 371  Q
    ||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || ||||||    
T  11701 cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttctt 11778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 3904846 - 3904923
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctt 371  Q
    ||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || ||||||    
T  3904846 cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttctt 3904923  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 7475308 - 7475396
Alignment:
Q  176 tcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 264  Q
    |||||||||||||||||| | |||||||||||||| |||||||    ||||||| | |||||||||||||| |||||||| ||| ||||    
T  7475308 tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctcc 7475396  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 49573035 - 49572947
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctga 382  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||| |||   |||||| ||||||||||| ||| ||||    
T  49573035 cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactttgtagcgggacataatcaccttcttctgccagctga 49572947  T

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Target: scaffold0522 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 5632 - 5686
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttg 348  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5632 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttg 5686  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 29760549 - 29760623
Alignment:
Q  292 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccacc 366  Q
    ||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||  |||| ||||||||||||    
T  29760549 cgcgtatggttatttcacttgatcagaagatagagaaatataaagttgttgactttatagctgaacataaccacc 29760623  T

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Target: scaffold0402 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 14297 - 14224
Alignment:
Q  292 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccac 365  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||    
T  14297 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac 14224  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 17939646 - 17939719
Alignment:
Q  292 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccac 365  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||    
T  17939646 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac 17939719  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 6827665 - 6827738
Alignment:
Q  292 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccac 365  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||    
T  6827665 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagcttaacataaccac 6827738  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 36383408 - 36383481
Alignment:
Q  292 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccac 365  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||    
T  36383408 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac 36383481  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 88039 - 88091
Alignment:
Q  72 agcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaagga 124  Q
    ||||||||| ||| ||||| ||||| || ||||||||||| ||||||||||||    
T  88039 agcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagga 88091  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 5358515 - 5358427
Alignment:
Q  294 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctga 382  Q
    ||||||||||||||||||| ||| ||||| || ||||| |||||| |||||| || |||   |||||| ||||||||||| ||| ||||    
T  5358515 cgtatggttatttcacttgttcggaagattggaaaatacaaggttattgactctgtagcgagacataatcaccttcttctgccagctga 5358427  T

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