View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0904-INSERTION-1 (Length: 456)

Name: NF0904-INSERTION-1
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0904-INSERTION-1
NF0904-INSERTION-1
[»] chr4 (28 HSPs)
chr4 (1-456)||(2518739-2519194)
chr4 (1-451)||(2490639-2491089)
chr4 (113-430)||(2533845-2534162)
chr4 (1-446)||(5035138-5035583)
chr4 (62-374)||(2525343-2525655)
chr4 (151-291)||(2621400-2621540)
chr4 (84-292)||(2467212-2467423)
chr4 (162-285)||(2547221-2547344)
chr4 (232-286)||(5106632-5106686)
chr4 (231-284)||(2367980-2368033)
chr4 (181-283)||(2373496-2373598)
chr4 (1-207)||(2486062-2486268)
chr4 (188-281)||(2475961-2476054)
chr4 (181-289)||(2460279-2460387)
chr4 (151-285)||(2471733-2471867)
chr4 (181-283)||(12124524-12124626)
chr4 (153-284)||(2381630-2381761)
chr4 (335-425)||(2467052-2467142)
chr4 (231-281)||(2546825-2546875)
chr4 (162-285)||(2393841-2393963)
chr4 (236-289)||(2477256-2477309)
chr4 (241-285)||(2363162-2363206)
chr4 (232-283)||(2391337-2391388)
chr4 (244-285)||(2625589-2625630)
chr4 (122-214)||(5102297-5102389)
chr4 (343-377)||(2477153-2477187)
chr4 (9-51)||(5102193-5102235)
chr4 (234-283)||(12126580-12126629)
[»] chr8 (2 HSPs)
chr8 (239-284)||(18314718-18314763)
chr8 (241-285)||(18318725-18318769)
[»] chr5 (2 HSPs)
chr5 (240-284)||(28673354-28673398)
chr5 (239-284)||(28695603-28695648)


Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 2519194 - 2518739
Alignment:
Q  1 tctttgataggttccccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaaggcgacctcagcgagcttctaaccaaaatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  2519194 tctttgataggttccccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatg 2519095  T
Q  101 cactttcccttcagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgaca 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2519094 cactttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgaca 2518995  T
Q  201 tatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaactcatccttaccgatacca 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2518994 tatctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgatacca 2518895  T
Q  301 tttataccaatgatttggtgatagatattgattttcaattcctggcgcttcctaaactccgcaagattgctttatcttgtaattttattggtcaccactc 400  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2518894 tttataccaatgatttggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgctttatcttgtaattttattggtcaccgctc 2518795  T
Q  401 aattatagatctctgcaagaactgtcacctccttacagaggtcaaattgattgatt 456  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2518794 aattatagatcactgcaagaactgtcacctccttacagaggtcaaattgattgatt 2518739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 2491089 - 2490639
Alignment:
Q  1 tctttgataggttccccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaaggcgacctcagcgagcttctaaccaaaatatg 100  Q
    ||||||| |||||||| ||| |||||||| |||| ||||| |||||||||| | |||||  || |||||  |||||||||||||||||     |||| |     
T  2491089 tctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggacaaatctc 2490990  T
Q  101 cactttcccttcagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgaca 200  Q
    |||||||||||  ||||||| ||||||| |||||||| | || ||||   ||||   | | |  |||| |||||||||    |  |||||||||||||||    
T  2490989 cactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaatttgaca 2490890  T
Q  201 tatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaactcatccttaccgatacca 300  Q
    | |||||||||||||| |||||  | |||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| | |     
T  2490889 tctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccgacaacg 2490790  T
Q  301 tttataccaatgatttggtgatagatattgattttcaattcctggcgcttcctaaactccgcaagattgctttatcttgtaattttattggtcaccactc 400  Q
     | || || |  |||  ||| |||| | ||||  ||||||  ||| |||||| ||||||||||||||||||||||||  |||||| |||||| | |||||    
T  2490789 gtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaatcactc 2490690  T
Q  401 aattatagatctctgcaagaactgtcacctccttacagaggtcaaattgat 451  Q
    | ||| ||||||||||||||||||| |||| |||  ||||| |||| ||||    
T  2490689 agttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtgat 2490639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 113 - 430
Target Start/End: Complemental strand, 2534162 - 2533845
Alignment:
Q  113 agacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgt 212  Q
    |||||||| |||||||||||||||||| |||  ||   ||||| || | | ||| | |||||||||  | || ||||||||||| |||| ||||||||||    
T  2534162 agacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgt 2534063  T
Q  213 tatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaactcatccttaccgataccatttataccaatg 312  Q
    ||||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||  |   || | || ||     
T  2534062 tatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactcatccttaccgactctggttgtccccata 2533963  T
Q  313 atttggtgatagatattgattttcaattcctggcgcttcctaaactccgcaagattgctttatcttgtaattttattggtcaccactcaattatagatct 412  Q
    |||  | |||||||| ||||  ||||||| |||||||||| |||||||||| |||||||||| ||  |||| |  |  || | |||||||||| | ||||    
T  2533962 attgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcataatatcgtcagtgagcactcaattaaaaatct 2533863  T
Q  413 ctgcaagaactgtcacct 430  Q
    ||||||||||||| ||||    
T  2533862 ctgcaagaactgtgacct 2533845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 5035583 - 5035138
Alignment:
Q  1 tctttgataggttccccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaaggcgacctcagcgagcttctaaccaaaatatg 100  Q
    ||||||| |||||||| ||  ||||||||||||| ||||||||| ||||| | | | ||  ||||||||   ||||| ||||| ||||| | ||||| |     
T  5035583 tctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcctggtcccgagaagctcacctcggcgagtttctagcgaaaatctc 5035484  T
Q  101 cactttcccttcagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgaca 200  Q
    | ||| ||||| | |||||| |||||||||||| |||||  || |||   ||||| || | | ||||| |||||||||  | || ||||||| ||| ||     
T  5035483 cgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatgaaaagtttaacg 5035384  T
Q  201 tatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaactcatccttaccgatacca 300  Q
    | |||| ||||||||||||||| || |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||      
T  5035383 tctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatccttactgatactg 5035284  T
Q  301 tttataccaatgatttggtgatagatattgattttcaattcctggcgcttcctaaactccgcaagattgctttatcttgtaattttattggtcaccactc 400  Q
     || | || || |||  |  ||||||| ||||  ||||||| | |||||||| |||||||||| |||||||||| || ||||| |  | |||   |||||    
T  5035283 gttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactc 5035184  T
Q  401 aattatagatctctgcaagaactgtcacctccttacagaggtcaaa 446  Q
    |||||   |||||||||||| |||| |||| |||  ||||||||||    
T  5035183 aattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaa 5035138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 62 - 374
Target Start/End: Complemental strand, 2525655 - 2525343
Alignment:
Q  62 ccgagaaggcgacctcagcgagcttctaaccaaaatatgcactttcccttcagacctcatatcgctcactctctaccatcctatcacccttcctaaagaa 161  Q
    ||||||||  |||||||| ||| |||||| | |||| | ||||||||||| |||||||| |||||||||||||||||| ||   ||   ||||| || |     
T  2525655 ccgagaagctgacctcagtgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaat 2525556  T
Q  162 gggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgatt 261  Q
    | |||||  | ||||||  | || |||||||||||||||| |||||||||||||||| ||| || |||  |||||||||||||  |||||||||||||||    
T  2525555 gagttgcgtgttttgtccaagaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgatt 2525456  T
Q  262 gtttccctttactcgaagaactcatccttaccgataccatttataccaatgatttggtgatagatattgattttcaattcctggcgcttcctaaactccg 361  Q
    |||||||| ||||||||||||||||||||||||| ||   || |   | | | |  |||||||||| ||||  ||||||| |||||||||| ||||||||    
T  2525455 gtttccctctactcgaagaactcatccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccg 2525356  T
Q  362 caagattgcttta 374  Q
    || ||||||||||    
T  2525355 caggattgcttta 2525343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 2621400 - 2621540
Alignment:
Q  151 ttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttctt 250  Q
    |||||| ||| ||||||| |||||| ||  |||| |||||||||||||||| |||||||||||| | ||| ||  | |||| |||||||||||| |||||    
T  2621400 ttcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattctt 2621499  T
Q  251 cattgctgattgtttccctttactcgaagaactcatcctta 291  Q
    | ||||||||||||||||||||||||||||||||| |||||    
T  2621500 ccttgctgattgtttccctttactcgaagaactcaacctta 2621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 2467423 - 2467212
Alignment:
Q  84 cttctaaccaaaatatgcactttcccttcagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaa 183  Q
    ||||| |||||||| | |||||||||||  ||||||| ||| |||||||||||||| || || ||  |||||  ||| ||||||| |||||| ||  ||     
T  2467423 cttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaag 2467324  T
Q  184 acatgaaaaatttgacatatctcacttgttatcaaatgaaat---atatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaaga 280  Q
    | ||||||||||||||||  ||||||||||| | |||    |   ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  2467323 agatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaaga 2467224  T
Q  281 actcatccttac 292  Q
     |||||||||||    
T  2467223 gctcatccttac 2467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 2547344 - 2547221
Alignment:
Q  162 gggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgatt 261  Q
    ||||||| |||||||||| |||| |||||||||||||| | ||||| |||||   |||| |  | ||||  |||||||||| | ||||||||||||||||    
T  2547344 gggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctgatt 2547245  T
Q  262 gtttccctttactcgaagaactca 285  Q
    ||||||||||||| ||||||||||    
T  2547244 gtttccctttacttgaagaactca 2547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
Q  232 acaagaatgatctcttcttcattgctgattgtttccctttactcgaagaactcat 286  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 2367980 - 2368033
Alignment:
Q  231 cacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaactc 284  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2367980 cacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 2373496 - 2373598
Alignment:
Q  181 aaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaaga 280  Q
    |||| |||||| ||||||| | ||||||||||| |  ||||||   | | ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2373496 aaaagatgaaatatttgacctctctcacttgttttggaatgaatagtgttcacaagagtgatctcttcttcattgctgattgtttccctttgctcgaaga 2373595  T
Q  281 act 283  Q
    |||    
T  2373596 act 2373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 2486268 - 2486062
Alignment:
Q  1 tctttgataggttccccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaaggcgacctcagcgagcttctaaccaaaatatg 100  Q
    ||||| || ||||||| || |||||||| | ||| ||||||||||||||||||||||||  | ||||| | |||||| |||||||||| ||  | || |     
T  2486268 tcttttatgggttccctaatgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttcttacacatatctc 2486169  T
Q  101 cactttcccttcagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgaca 200  Q
    |||||||||||  ||||||| ||| |||||||||||| | || ||||  ||||||  | | |   ||| |||||||||  |||| |||||||||||||||    
T  2486168 cactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatttgaca 2486069  T
Q  201 tatctca 207  Q
    | |||||    
T  2486068 tctctca 2486062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 2476054 - 2475961
Alignment:
Q  188 gaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaa 281  Q
    |||||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||||||||||  | ||| |||| || |||||||||||||||    
T  2476054 gaaaaatttgacatctctcacttgttacaaaaagaattatatccacaaggatgatctcttctttctagctaattgctttcctttactcgaagaa 2475961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 2460387 - 2460279
Alignment:
Q  181 aaaacatgaaaaatttgacatatctcacttgttatcaaatg--aaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaa 278  Q
    |||| |||||||| ||||||| ||||| ||||   ||||||  ||||||||  |||||||| |||||||||| |||||||||||||| || |||||||||    
T  2460387 aaaagatgaaaaaattgacatttctcaattgta--caaatgttaaatatatggacaagaatcatctcttcttaattgctgattgttttccattactcgaa 2460290  T
Q  279 gaactcatcct 289  Q
    |||||||||||    
T  2460289 gaactcatcct 2460279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 285
Target Start/End: Complemental strand, 2471867 - 2471733
Alignment:
Q  151 ttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttctt 250  Q
    ||||| |||| || |||| |||| ||||| |||| ||||| || ||||||| ||| | |||||   || | || |||||| |||||||| ||||||||||    
T  2471867 ttcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaattgttccaaagttaattatatcgacaagaatcatctcttctt 2471768  T
Q  251 cattgctgattgtttccctttactcgaagaactca 285  Q
     || ||||||||||| |||||||||||||||||||    
T  2471767 gatagctgattgttttcctttactcgaagaactca 2471733  T

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Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 12124626 - 12124524
Alignment:
Q  181 aaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcgaaga 280  Q
    |||| |||||||||||||| | |||||||||||    |||||  | ||| |  |||| |||||||||||||||||||||||||||||||||||| |||||    
T  12124626 aaaagatgaaaaatttgacctctctcacttgttccagaatgatttgtatgctaaagagtgatctcttcttcattgctgattgtttccctttactagaaga 12124527  T
Q  281 act 283  Q
    |||    
T  12124526 act 12124524  T

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Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 284
Target Start/End: Original strand, 2381630 - 2381761
Alignment:
Q  153 cctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttca 252  Q
    |||||||| ||||| | |||||||||  |||| |||||||||||||| | ||| ||||||| | |||| |  |  ||| ||||||| ||| |||| ||||    
T  2381630 cctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttctgaaattacttggatcaacaagaaggatttcttattca 2381729  T
Q  253 ttgctgattgtttccctttactcgaagaactc 284  Q
    |||  ||||| |||||||||||||||||||||    
T  2381730 ttgtcgattgcttccctttactcgaagaactc 2381761  T

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Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 2467142 - 2467052
Alignment:
Q  335 tcaattcctggcgcttcctaaactccgcaagattgctttatcttgtaattttattggtcaccactcaattatagatctctgcaagaactgt 425  Q
    |||||| ||||  ||||| |||||||||||||||||||||||| ||||||||||||||  ||| || ||||   ||||||||| |||||||    
T  2467142 tcaattgctggaacttccaaaactccgcaagattgctttatctcgtaattttattggttgccaatctattaactatctctgcaggaactgt 2467052  T

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Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 2546875 - 2546825
Alignment:
Q  231 cacaagaatgatctcttcttcattgctgattgtttccctttactcgaagaa 281  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||||||    
T  2546875 cacaagaatgatttattcttcattgctgattgttttcctttactcgaagaa 2546825  T

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Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 2393841 - 2393963
Alignment:
Q  162 gggttgcaagctttgtctcaaaacatgaaaaa-tttgacatatctcacttgttatcaaatgaaatatatccacaagaatgatctcttcttcattgctgat 260  Q
    ||||||| ||||||||| ||||| |||||||| |||||||| |||||| |  ||  ||||||    ||||  |||||||| |||||| ||||||||||||    
T  2393841 gggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcacattcta--aaatgactattatctgcaagaatggtctctttttcattgctgat 2393938  T
Q  261 tgtttccctttactcgaagaactca 285  Q
    | ||||||||||||| |||||||||    
T  2393939 tttttccctttactccaagaactca 2393963  T

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Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 2477309 - 2477256
Alignment:
Q  236 gaatgatctcttcttcattgctgattgtttccctttactcgaagaactcatcct 289  Q
    ||||||||||||||||||| || ||||||||||||| || ||||||||||||||    
T  2477309 gaatgatctcttcttcatttctaattgtttccctttgctagaagaactcatcct 2477256  T

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Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 2363162 - 2363206
Alignment:
Q  241 atctcttcttcattgctgattgtttccctttactcgaagaactca 285  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  2363162 atctcttcttcattgctgattgtttccctttcctcgacgaactca 2363206  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 2391337 - 2391388
Alignment:
Q  232 acaagaatgatctcttcttcattgctgattgtttccctttactcgaagaact 283  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||||||    
T  2391337 acaagaaggatatcttcttcattgttgattgcttccctttactcgaagaact 2391388  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 2625589 - 2625630
Alignment:
Q  244 tcttcttcattgctgattgtttccctttactcgaagaactca 285  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  2625589 tcttctttattgttgattgtttccctttactcgaagaactca 2625630  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 5102297 - 5102389
Alignment:
Q  122 atcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgtta 214  Q
    ||||||| |||||||||| || || |  ||||||| | ||||||||| ||| || || ||||| |||||||||||||||| | ||||||||||    
T  5102297 atcgctcgctctctaccaccccattaagcttcctacaaaagggttgcgagcattctcccaaaagatgaaaaatttgacatctatcacttgtta 5102389  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 2477187 - 2477153
Alignment:
Q  343 tggcgcttcctaaactccgcaagattgctttatct 377  Q
    |||||||||| ||||||||||||||||||||||||    
T  2477187 tggcgcttcccaaactccgcaagattgctttatct 2477153  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 5102193 - 5102235
Alignment:
Q  9 aggttccccaacgttacatcactcaacatcactctctcttccc 51  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||    
T  5102193 aggttccctaacgtcacatcactcaacatcaccctctcttccc 5102235  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 12126629 - 12126580
Alignment:
Q  234 aagaatgatctcttcttcattgctgattgtttccctttactcgaagaact 283  Q
    |||| |||||||||||| ||||| ||||||| ||||||||| ||||||||    
T  12126629 aagagtgatctcttctttattgcagattgttgccctttactagaagaact 12126580  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 18314718 - 18314763
Alignment:
Q  239 tgatctcttcttcattgctgattgtttccctttactcgaagaactc 284  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    
T  18314718 tgatctcttcctcattgctgattgtttccctttgctcgaagaactc 18314763  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 18318725 - 18318769
Alignment:
Q  241 atctcttcttcattgctgattgtttccctttactcgaagaactca 285  Q
    |||||||| ||||||| |||||||||||||| || ||||||||||    
T  18318725 atctcttcctcattgcagattgtttccctttccttgaagaactca 18318769  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 28673354 - 28673398
Alignment:
Q  240 gatctcttcttcattgctgattgtttccctttactcgaagaactc 284  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  28673354 gatctcttcttcattgctgattgcttccctttgctcgaagaactc 28673398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 28695603 - 28695648
Alignment:
Q  239 tgatctcttcttcattgctgattgtttccctttactcgaagaactc 284  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||    
T  28695603 tgatctcttcttcattgctgattgcttccctttgcccgaagaactc 28695648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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