View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0904-INSERTION-10 (Length: 689)

Name: NF0904-INSERTION-10
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0904-INSERTION-10
NF0904-INSERTION-10
[»] chr4 (21 HSPs)
chr4 (11-671)||(26120713-26121383)
chr4 (11-283)||(26128547-26128810)
chr4 (12-158)||(26111709-26111855)
chr4 (12-151)||(26085379-26085518)
chr4 (12-158)||(26056135-26056281)
chr4 (12-158)||(26067797-26067943)
chr4 (26-225)||(26038150-26038362)
chr4 (434-579)||(26038323-26038470)
chr4 (269-365)||(26128426-26128522)
chr4 (291-371)||(26037964-26038046)
chr4 (30-88)||(26065545-26065603)
chr4 (61-102)||(26056612-26056653)
chr4 (434-537)||(26128799-26128903)
chr4 (546-589)||(26127432-26127475)
chr4 (434-537)||(26056271-26056375)
chr4 (434-561)||(26111821-26111949)
chr4 (434-561)||(26121348-26121476)
chr4 (434-537)||(26067933-26068037)
chr4 (639-671)||(26085130-26085162)
chr4 (434-537)||(26085508-26085612)
chr4 (639-671)||(26097411-26097443)


Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 11 - 671
Target Start/End: Complemental strand, 26121383 - 26120713
Alignment:
Q  11 gttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26121383 gttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcc 26121284  T
Q  111 tcccttttgctggacccaagactcaggtttcattttcatcaaagattatatctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  26121283 tcccttttgctggacccaagactcaggtttcattttcatcaaagattatatctttcattttttaaatttgggtcttctcttaaattttaaggtcttgcat 26121184  T
Q  211 gatttatgttgactcgaaatttaatttatatcttttgactttactgtttttgttttgtggtcattgtgatactgtgtttgatcttaatgattttagttga 310  Q
    |||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26121183 gatttatgttgactcgaaa-----tttatatcttttgactttactgtttttgttttgtggtcattgtgatactgtgtttgatcttactgattttagttga 26121089  T
Q  311 ctcaaaatttcaaaatttgatagtcatatattaagtttcagactttcagaattgtgggatatctatttttgagatgatattgttcattgccaact----- 405  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         
T  26121088 ctcaaaatttcagaatttgatggtcatatattaagtttcagactttcagaattgtgggatatctatttttgagatgatattgttcattgacaacttaaac 26120989  T
Q  406 ---------taatcagaggaacaccccagtctcaaagtttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaac 495  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  26120988 ccaacgccataatcagaggaacaccccagtctcaaagtttgaggtggtggtgtattcaatgattgggcgcaaagaaatagaaggacccttaatgcaaaac 26120889  T
Q  496 aatccttattctctacgcaaatcaaggatcgctaccactgtagtaatcaaagttcttattggatgctcttagctttcttctttcacaaacatgannnnnn 595  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||          
T  26120888 aatccttaatctctacgcaaatcaaggatcgctaccactgtagtaatcggagttcttattggatgctcttagctttcttctttcacaaacatgattttat 26120789  T
Q  596 nnnnnnnnnngtaggaaaattcaactgaatgtgaatcaaaaactgtggcacttttatcagataaaaatgcagagct 671  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26120788 tttttcttttgtaggaaaattcaactgaatgtgaatcaaaaactgtggcacttttatcagataaaaatgcagagct 26120713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 26128810 - 26128547
Alignment:
Q  11 gttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcc 110  Q
    |||||| |||||||||| | |||||||| |||||||||| || |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||     
T  26128810 gttaccgctgtaatcatagtagttcttactggatgcatcatagttttcttttttcctaatgacttctttgcttctcaatccattacctcaattcgtctct 26128711  T
Q  111 tcccttttgctggacccaagactcaggtttcattttcatcaaagatta--tatctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgc 208  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||  |||||||| | ||     |||   || | | ||||||||||||||| |||    
T  26128710 tcccttttgctggacccaagacccaggtttctttttcatcaaagattatttatctttcgtgtt-----tttctttcat-ttttaaattttaaggtcttgc 26128617  T
Q  209 atgatttatgttgactcgaaatttaatttatatcttttgactttactgtttttgttttgtggtcattgtgatact 283  Q
    ||||||| ||||||||| |     |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26128616 atgatttttgttgactcca-----aatttatatcttttgactttactgtttttgttttgtggtctttgtgatact 26128547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 26111855 - 26111709
Alignment:
Q  12 ttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcct 111  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26111855 ttaccactgtaatcattggagttcttattggatgcatcatagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacct 26111756  T
Q  112 cccttttgctggacccaagactcaggtttcattttcatcaaagatta 158  Q
     ||| |||||| ||||||||| |||||||||||||||||||||||||    
T  26111755 acctgttgctgtacccaagacccaggtttcattttcatcaaagatta 26111709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 26085518 - 26085379
Alignment:
Q  12 ttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcct 111  Q
    ||||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26085518 ttaccactgtaatcattggagttcttgctggatgcatcatagttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtcacct 26085419  T
Q  112 cccttttgctggacccaagactcaggtttcattttcatca 151  Q
     ||| |||||| ||||||||| ||||||||||||||||||    
T  26085418 acctgttgctgtacccaagacccaggtttcattttcatca 26085379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 26056281 - 26056135
Alignment:
Q  12 ttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcct 111  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| |||    
T  26056281 ttaccactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacct 26056182  T
Q  112 cccttttgctggacccaagactcaggtttcattttcatcaaagatta 158  Q
     ||| |||||| ||||||||| |||||||||||||||||||||||||    
T  26056181 acctgttgctgtacccaagacccaggtttcattttcatcaaagatta 26056135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 26067943 - 26067797
Alignment:
Q  12 ttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcct 111  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| |||    
T  26067943 ttaccactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacct 26067844  T
Q  112 cccttttgctggacccaagactcaggtttcattttcatcaaagatta 158  Q
     ||| |||||| ||||||||| |||||||||||||||||||||||||    
T  26067843 acctgttgctgtacccaagacccaggtttcattttcatcaaagatta 26067797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 26038362 - 26038150
Alignment:
Q  26 attggagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggac 125  Q
    ||||| |||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| | || || ||| ||||     
T  26038362 attggtgttcttattggatgcatcttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggat 26038263  T
Q  126 ccaagactcaggtttcattttcatcaaagattata-------------tctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatga 212  Q
    |||| || ||||||| |||||||||||||||| ||             |||||||||||| || |||||||||| |||| ||||||||| || |||||||    
T  26038262 ccaaaacccaggttttattttcatcaaagattgtagcttttgtgtttttctttcatttttgaattttgggtcttgtcttgaattttaagctcttgcatga 26038163  T
Q  213 tttatgttgactc 225  Q
    |||  ||||||||    
T  26038162 ttttcgttgactc 26038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 434 - 579
Target Start/End: Complemental strand, 26038470 - 26038323
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaag-acccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    ||||||||||||||   | ||||||||||||||||||||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||||||| |||      
T  26038470 tttgaggtggtggtagctacaatgattgggcgcagagaaagagaaggacccttaatgcgaaacaaccctcattctctacgcaaatcaaggatcgttactg 26038371  T
Q  533 ctgtagtaatcaaagttcttattggatgc-tcttagctttcttctttc 579  Q
    ||||||||||    ||||||||||||||| ||||||||||||| ||||    
T  26038370 ctgtagtaattggtgttcttattggatgcatcttagctttcttttttc 26038323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 26128522 - 26128426
Alignment:
Q  269 ggtcattgtgatactgtgtttgatcttaatgattttagttgactcaaaatttcaaaatttgatagtcatatattaagtttcagactttcagaattgt 365  Q
    ||||||||||  | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||    
T  26128522 ggtcattgtggaattgtgtttgatcttactgattttagttgactcaaaatttcagaatttgatagtcatataataagcttcagactttcagatttgt 26128426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 26038046 - 26037964
Alignment:
Q  291 atcttaatgattttagttgactcaaaatttcaaaatttgatagtcat--atattaagtttcagactttcagaattgtgggata 371  Q
    |||||||||||||| ||||||| ||||||| | ||||||||||||||  |||||||||||| || ||| ||||||||||||||    
T  26038046 atcttaatgattttcgttgactgaaaattttagaatttgatagtcatatatattaagtttctgaattttagaattgtgggata 26037964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 26065603 - 26065545
Alignment:
Q  30 gagttcttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaa 88  Q
    |||||||||| ||||||||||||  ||||| |||||| |||||||||||||||||||||    
T  26065603 gagttcttataggatgcatcttagctttcttttttcccaatgacttctttgtttctcaa 26065545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 26056612 - 26056653
Alignment:
Q  61 ttttcctaatgacttctttgtttctcaatctattacctcaat 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  26056612 ttttcctaatgacatctttgtttctcaatctattacctcaat 26056653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 537
Target Start/End: Complemental strand, 26128903 - 26128799
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    ||||||||||||||| || ||||||||| || |||||||| |||| ||||||| ||| | ||||| |||||||||||| ||| ||||| ||| | ||||     
T  26128903 tttgaggtggtggtggatacaatgattgagcacagagaaagagaaggacccttgatgaagaacaacccttattctctaagcatatcaaagattgttaccg 26128804  T
Q  533 ctgta 537  Q
    |||||    
T  26128803 ctgta 26128799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 589
Target Start/End: Complemental strand, 26127475 - 26127432
Alignment:
Q  546 agttcttattggatgctcttagctttcttctttcacaaacatga 589  Q
    |||| |||||||||||||||||||||||||||||| ||||||||    
T  26127475 agttattattggatgctcttagctttcttctttcataaacatga 26127432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 537
Target Start/End: Complemental strand, 26056375 - 26056271
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    |||||| |||||||| || ||||||||| ||||||||||| |||| ||||||| ||| | ||||  ||| | ||||||| || ||||||||||  |||||    
T  26056375 tttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacccttgatgaagaacagccctcaatctctactcatatcaaggatcattacca 26056276  T
Q  533 ctgta 537  Q
    |||||    
T  26056275 ctgta 26056271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 561
Target Start/End: Complemental strand, 26111949 - 26111821
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    |||||| |||||||| || ||||||||| ||||||||||| |||| |||| || ||| | ||||  ||| | ||||||| || ||||||||||  |||||    
T  26111949 tttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattacca 26111850  T
Q  533 ctgtagtaatcaaagttcttattggatgc 561  Q
    ||||| | ||   ||||||||||||||||    
T  26111849 ctgtaatcattggagttcttattggatgc 26111821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 561
Target Start/End: Complemental strand, 26121476 - 26121348
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    |||||||| |||||| || |||||||||||| |||||||| |||| ||| ||| ||| | |||||  || ||||||||| || |||||  |||| |||||    
T  26121476 tttgaggtagtggtggatacaatgattgggctcagagaaagagaaggacgcttgatgaagaacaactctcattctctactcatatcaataatcgttacca 26121377  T
Q  533 ctgtagtaatcaaagttcttattggatgc 561  Q
    ||||| | ||   ||||||||||||||||    
T  26121376 ctgtaatcattggagttcttattggatgc 26121348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 537
Target Start/End: Complemental strand, 26068037 - 26067933
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    |||||| |||||||| || ||||||||| ||||||||||| |||| |||| || ||| | ||||  ||| | ||||||| || ||||||||||  |||||    
T  26068037 tttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattacca 26067938  T
Q  533 ctgta 537  Q
    |||||    
T  26067937 ctgta 26067933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 671
Target Start/End: Complemental strand, 26085162 - 26085130
Alignment:
Q  639 tgtggcacttttatcagataaaaatgcagagct 671  Q
    ||||||||| |||||||||||||||||||||||    
T  26085162 tgtggcactcttatcagataaaaatgcagagct 26085130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 537
Target Start/End: Complemental strand, 26085612 - 26085508
Alignment:
Q  434 tttgaggtggtggtgtattcaatgattgggcgcagagaaatagaa-gacccttaatgcaaaacaatccttattctctacgcaaatcaaggatcgctacca 532  Q
    |||||| |||||||| || ||||||||| ||||||||||| |||| |||| || ||| | ||||  ||| | ||||||| || ||||||||||  |||||    
T  26085612 tttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattacca 26085513  T
Q  533 ctgta 537  Q
    |||||    
T  26085512 ctgta 26085508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 671
Target Start/End: Complemental strand, 26097443 - 26097411
Alignment:
Q  639 tgtggcacttttatcagataaaaatgcagagct 671  Q
    ||||||||| |||||||||||||||||||||||    
T  26097443 tgtggcactgttatcagataaaaatgcagagct 26097411  T

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