View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-12 (Length: 633)
Name: NF0904-INSERTION-12
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-12 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 176 - 424
Target Start/End: Complemental strand, 12202406 - 12202152
Alignment:
| Q |
176 |
aagagtttatgttaagagaaacaaagaaggnnnnnnnntaggaatatccacgtgaccaaaagtgagaggagagaggtggaacatgaattaattatgcaag |
275 |
Q |
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| T |
12202406 |
aagagtttatgttaagagaaataaagaaggaaaaaaa-taggaatatccacgtgaccaaaagtgagaggagagagatggaacatgaattaattatgcaag |
12202308 |
T |
|
| Q |
276 |
ggaaattttgttataaggaggttgagtggggagagaatagtatcatcacctacatttgtgattcgttttgattatgtcctcatttctttaactttgtgat |
375 |
Q |
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| T |
12202307 |
ggaaattttgttataaggaggttgagtggggagagaatagtatcatcacctacatttgtgattcgttttgattatgtcctcatttctttaactttgtgat |
12202208 |
T |
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| Q |
376 |
accaacgatgtaattcaaga-------atgattcattagataaggatctttcgcct |
424 |
Q |
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| T |
12202207 |
accaacgatgtaattcaagaatgaatcatgattcattagataaggatctttcgcct |
12202152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 447 - 633
Target Start/End: Complemental strand, 12202116 - 12201930
Alignment:
| Q |
447 |
aaaaaatatgaatttattaatataggaacgcacaagatgtgcaagtaccaaaaaatagcctgtagccaaattcaacccaaaataaataaaactccacccc |
546 |
Q |
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| T |
12202116 |
aaaaaatatgaatttattaatataggaacgcacaagatgtgcaagtaccaaaaaatagcctgtagccaaattcaacccaaaataaataaaactccgcccc |
12202017 |
T |
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| Q |
547 |
taacaccaaggagcaaaccgaactccttatatcagcaacaaaacagactagttgcatgactaaaagcaggaactaagataacagata |
633 |
Q |
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| T |
12202016 |
taacaccaaggagcaaaccgaactccttaaatcagcaacaaaacagactagttacatgcctaaaagcaggaactaagataacagata |
12201930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 12202564 - 12202403
Alignment:
| Q |
1 |
atagtatatgataatgatttgtatcgaatttggttgcttttctcatataaattaga--cttcaattcccttattttactctcctactctcctagtttggt |
98 |
Q |
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| T |
12202564 |
atagtatatgataatgatttgtatcgaatttggttgcttttctcatataaattagagacttcaattcccttattttactctcctactctcctagtttggt |
12202465 |
T |
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| Q |
99 |
ggatagttgataggactctcgatgc--gaatgtgggttt--tggggcagttagcatataaga |
156 |
Q |
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| T |
12202464 |
ggatagttgtaaggactctcaatgcgagaatgtgggtttaaaggggcagttagcatataaga |
12202403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 496 - 626
Target Start/End: Complemental strand, 40755216 - 40755085
Alignment:
| Q |
496 |
aaaaaatagcctgtagccaaattcaacccaaa-ataaataaaactccacccctaacaccaaggagcaaaccgaactccttatatcagcaacaaaacagac |
594 |
Q |
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|||| |||||||||||||||||| ||||| || ||| |||||||||| |||||||| ||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
40755216 |
aaaatatagcctgtagccaaattatacccatgtattaatcaaactccacctctaacaccgaggagcaaaccgatctccttatatcagcaccaaatcagac |
40755117 |
T |
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| Q |
595 |
tagttgcatgactaaaagcaggaactaagata |
626 |
Q |
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| T |
40755116 |
tagcaacacgcttaaaagcaggaactatgata |
40755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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