View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-14 (Length: 460)
Name: NF0904-INSERTION-14
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-14 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 6334068 - 6333717
Alignment:
| Q |
8 |
agattcacaggttgaaaaaatgtcaaaacatttaaaatattaaagaccaatattgagt--atnnnnnnnccgaatgaaagttcaatcgaatactatcgta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
6334068 |
agattcacaggttgaaaaaatgtcaaaacatttaaaatattaaagaccaatattgagtcaaaaaaaaaaacgaatgaaagttgaatcgaatactatcgta |
6333969 |
T |
|
| Q |
106 |
taaaacgattcgtattaaacgtttaaatgggccactttctcatccaaattgtgtcatacctctttttccatgttttttcttcatatctctttttccaaac |
205 |
Q |
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| T |
6333968 |
taaaacgattcgtattaaacgtttaaatgggtcactttctcatccaaattgtgtcatacctctttttccctgttttttcttcatatctctttttccaaaa |
6333869 |
T |
|
| Q |
206 |
ctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagc------tacaat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||| |||||| |
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| T |
6333868 |
ctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagtttagtttgaagaacaatggctgaattaggagctacaattacaat |
6333769 |
T |
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| Q |
297 |
tccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaatt |
348 |
Q |
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| T |
6333768 |
tccaaatgcaacttcaacttcatcagcttcaacaaggtaaataacttcaatt |
6333717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 6326587 - 6326126
Alignment:
| Q |
7 |
aagattcacaggttgaaaaaatgtcaaaacatttaaaatattaaagaccaatattgagt--------atnnnnnnnccgaatgaaagttcaatcgaatac |
98 |
Q |
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| T |
6326587 |
aagatccacaggttgaaaaaatgtcaaa-catttaaaatattaaagaccaatattgagtccaaaaaaaaaaaaaaaacgaatgaaagttcaatcgaatac |
6326489 |
T |
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| Q |
99 |
tatcgtataaaacgattcgtattaaacgtttaaatgggccactttctca-----tccaaattgtgtcatacctctttttccatgttttttcttcatatct |
193 |
Q |
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| T |
6326488 |
tatcgtataaaacgattcgtattaaacgtttaa-tgggtcactttcactatctttccaaagtgtgtcaagcctctttttccatgtcttttcttc------ |
6326396 |
T |
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| Q |
194 |
ctttttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctac |
293 |
Q |
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| T |
6326395 |
--tattccaaaactcaactcttctataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctac |
6326298 |
T |
|
| Q |
294 |
aattccaaatgcaacttcaac------ttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttcccc |
387 |
Q |
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| T |
6326297 |
aattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttcccc |
6326198 |
T |
|
| Q |
388 |
nnnnnnnnagtagaaccctgtttttccattcaagnnnnnnnnnnnagtcaattgaagttcaatactagtataa |
460 |
Q |
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| T |
6326197 |
ttttttttagtagaaccctgtttttccattcaag-atttttttttagtcaattgaagttcaatactagtataa |
6326126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 6242427 - 6242582
Alignment:
| Q |
223 |
aaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgc------aacttcaa |
313 |
Q |
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| T |
6242427 |
aaaagcaatattgaagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaa |
6242526 |
T |
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| Q |
314 |
cttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacatt |
369 |
Q |
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| T |
6242527 |
cttcatcggattcaataaggtaaataacttcaattttcaatcactactcaaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 6220904 - 6220993
Alignment:
| Q |
198 |
ttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaa---gagtttaacgaacaatggctgaatt |
284 |
Q |
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| T |
6220904 |
ttccaaacatcaactattatataagtaaaccaatattgaagcatgtgttgtactcatcaaaagttgagtttgaagaacaatggcagaatt |
6220993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 6242322 - 6242406
Alignment:
| Q |
81 |
gaaagttcaatcgaatactatcgtataaaacga-ttcgtattaaacgttta-aatgggccactttctcatccaaattgtgtcata |
163 |
Q |
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| T |
6242322 |
gaaatttcaatcgagaactatagtataaaacgaattcgtattaaacgtttttaatgggtcactgtctcatccaaattgtttcata |
6242406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 6220826 - 6220869
Alignment:
| Q |
8 |
agattcacaggttgaaaaaatgtcaaaacatttaaaatattaaag |
52 |
Q |
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| T |
6220826 |
agatccacaagttgaaaaaatgtcaaa-catttaaaatattaaag |
6220869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 6347413 - 6347385
Alignment:
| Q |
33 |
aaacatttaaaatattaaagaccaatatt |
61 |
Q |
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| T |
6347413 |
aaacatttaaaatattaaagaccaatatt |
6347385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 103 - 384
Target Start/End: Original strand, 528 - 810
Alignment:
| Q |
103 |
gtataaaacga-ttcgtattaaacgtttaaatgggccactttctcatccaaattgtgtcatacctctttttccatgttttttcttcatatctctttttcc |
201 |
Q |
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||||||||||| |||||||||||||||| ||||| |||| |||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
528 |
gtataaaacgaattcgtattaaacgtttttatgggtcactgtctcatgcaaattgtttcatagctccttttccatgttttttcttcatagctctttttcc |
627 |
T |
|
| Q |
202 |
aaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatca---aaag---agtttaacgaacaatggctgaattagaagctacaa |
295 |
Q |
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||||||| ||| | | |||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||| ||||||| |||||||| |
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| T |
628 |
aaacctcgactct------ataaaagcaatattgaagaatgtgttgtactcatcatcaaaagttgagtttgaagaacaatggcagaattaggagctacaa |
721 |
T |
|
| Q |
296 |
ttccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttc |
384 |
Q |
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| T |
722 |
ttccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttc |
810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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