View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-15 (Length: 288)
Name: NF0904-INSERTION-15
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 30931569 - 30931857
Alignment:
| Q |
1 |
atggaaaggttcaactattagtcttgatatcaccacctacaatgctcaacatctgcttttccaaaacgactcataagctagcgagaaattccagcagcat |
100 |
Q |
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| T |
30931569 |
atggaaaggttcaactattagtcttgaaatcgccaccaacaatgctcaacatctgcttttccaaaatgactcaaaagctagcgagaaattccagcagcat |
30931668 |
T |
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| Q |
101 |
atcagagtttacgacatgatgtttgcattcacatcaccatagaaaagttggataaccattttaataacggtatgggacatccacctaatagaattcaagg |
200 |
Q |
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| T |
30931669 |
atcagagtttacgacatgatgtttgcattgacatcaccatacaaaagttggataaccattttaataacggtaagggacatccacctaatagaattcaagg |
30931768 |
T |
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| Q |
201 |
taaatcatgtcatgcag-taggagtttgctgcctatgtctggacaatcgccaaaatttgctttgctttacatttacaatacatagaatg |
288 |
Q |
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| T |
30931769 |
taaatcatgtcatgcagttaggagtttgctgcctatgtctggacaatcgccaaaatttgctttgctttacatttacaatacatagaatg |
30931857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 30961971 - 30962139
Alignment:
| Q |
46 |
tcaacatctgcttttccaaaacgactcataagctagcgagaaattccagcagcatatcagagtttacgacatgatgtttgcattcacatcacca-tagaa |
144 |
Q |
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|||||||||||||||||||||| |||| ||||||| ||||||| || |||| ||||||||||||| | | |||||||||||||| |||| | ||| |
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| T |
30961971 |
tcaacatctgcttttccaaaacagctcaacagctagcaagaaattacaacagcgtatcagagtttacaatgtcatgtttgcattcacctcacaaggggaa |
30962070 |
T |
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| Q |
145 |
aagttggataaccattttaataacggtatgggacatccacctaatagaattcaaggtaaatcatgtcat |
213 |
Q |
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| T |
30962071 |
aagttggataaccgttttaataatagtaggggatcaccaattattagaactcaaggtcaatcatgtcat |
30962139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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