View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-16 (Length: 732)
Name: NF0904-INSERTION-16
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 732
Target Start/End: Complemental strand, 27356909 - 27356178
Alignment:
| Q |
1 |
gaaattgtgggaaaaa-cagtagcataggagtgaaattgttgagaagtatcatcagttatatccaagccagctccaagaaattggatcagtcaagtactt |
99 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356909 |
gaaattgtgggaaaaaacagtagcataggagtgaaattgttgagaagtatcatcagttatatccaagccagctccaagaaattggatcagtcaagtactt |
27356810 |
T |
|
| Q |
100 |
agaagcacgcaatggaacacatattttgtggagattatgcataatatccctaacttgtttcccaaggagtgaagtattagcctttctagttatctgaatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356809 |
agaagcacgcaatggaacacatattttgtggagattatgcataatatccctaacttgtttcccaaggagtgaagtattagcctttctagttatctgaatt |
27356710 |
T |
|
| Q |
200 |
ccaagaccctccccaaacaaataattgagggcagctccaaattctgcatatgnnnnnnnnnnnnnnnnnggtctgtagacaaagtggtaaacaccaccga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
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| T |
27356709 |
ccaagaccctccccaaacaaataattgagggcagctccaaattctgcatat--tttttaatttttttttggtctatagacaaagtggtaaacaccactga |
27356612 |
T |
|
| Q |
300 |
aactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggctttatagacaaatt |
399 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
27356611 |
aactcacacacactgcaatgtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcggcattgccaattaagctaggctttacagacaaatt |
27356512 |
T |
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| Q |
400 |
ttgcatattttatacaagcatactttatataagcctttgcatgttcattaa-ggcttcttgcaaagtttaatcatatcaccaattaagttcaaagcaggt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356511 |
ttgcatattttatacaagcatactttatataagcctttgcatgttcattaaaggcttcttgcaaagtttaatcatatcaccaattaagttcaaagcaggt |
27356412 |
T |
|
| Q |
499 |
cttcaatcagactctaggataatgaacatgtagtcaaaccagctgcaagcccttaaaaatagccattaattaagcatatcaaaattagtagttatggcat |
598 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356411 |
cttcaataagactctaggataatgaacatgtagtcaagccagctgcaagcccttaaaaatagccattaattaagcatatcaaaattagtagttatggcat |
27356312 |
T |
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| Q |
599 |
aagaacctgagaaaccttgaagccattcactatgattgtttctcaaatgactgccatagcttgttttaccaaatttccattagagctaccatccatgtta |
698 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
27356311 |
aagaacctgagaaaccttgaagccattcactatgattgtttctcaaatgactgccatagcttgttttaccaaatttccattagagctaccatctacgtta |
27356212 |
T |
|
| Q |
699 |
ctttgggcaactaacattcctaatagatggagtt |
732 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
27356211 |
atttgggcaactaacattcctaatagatgaagtt |
27356178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 2107309 - 2107357
Alignment:
| Q |
346 |
gtccaacctaacaatttcgacattgccaattaagctaggctttatagac |
394 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
2107309 |
gtccaacctaacaatatcgacattgccaattaagctaggccttacagac |
2107357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 270 - 369
Target Start/End: Complemental strand, 38711566 - 38711467
Alignment:
| Q |
270 |
gtctgtagacaaagtggtaaacaccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacatt |
369 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||| || | ||||| || |||||||||| |||||| ||| ||| |||||||||||||||| |
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| T |
38711566 |
gtctgtacacaaagtagtaaacaccactaaaactcacacatactgtaaggttttagattcgaacccaagtaaagacgttcaatttaacaatttcgacatt |
38711467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 1419360 - 1419249
Alignment:
| Q |
274 |
gtagacaaagtggtaaacaccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgcca |
373 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||| ||| ||| |||| |||| || |||||||| |||||||||||||| ||||||||| |
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| T |
1419360 |
gtagacgaagtggtaaacaccattgaaactcacacacactgcattgtctcgggttc--acccgagtgaaggcgtctaacctaacaatttcaacattgcca |
1419263 |
T |
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| Q |
374 |
attaagctaggctt |
387 |
Q |
| |
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|| |||||||||| |
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| T |
1419262 |
gttgagctaggctt |
1419249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 35979104 - 35979202
Alignment:
| Q |
291 |
caccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggcttta |
389 |
Q |
| |
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|||||| |||||||| |||| | |||||||| |||| ||| ||||| ||||||| ||||||||||||||| |||||||| || |||| ||||||| |
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| T |
35979104 |
caccactgaaactcatacactctgcaaggtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggcttta |
35979202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 36000516 - 36000614
Alignment:
| Q |
291 |
caccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggcttta |
389 |
Q |
| |
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|||||| |||||||| |||| | |||||||| |||| ||| ||||| ||||||| ||||||||||||||| |||||||| || |||| ||||||| |
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| T |
36000516 |
caccactgaaactcatacactctgcaaggtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggcttta |
36000614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 45312274 - 45312205
Alignment:
| Q |
326 |
gttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggctttatagaca |
395 |
Q |
| |
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| T |
45312274 |
gttcgaacctgggtgaaggtgtccaacctaacaatttcggcattgtcagttgagctatgctttacagaca |
45312205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 37190832 - 37190790
Alignment:
| Q |
270 |
gtctgtagacaaagtggtaaacaccaccgaaactcacacacac |
312 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||| |
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| T |
37190832 |
gtctctagacaaagtggtaaacaccactaaaactcacacacac |
37190790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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