View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-18 (Length: 662)
Name: NF0904-INSERTION-18
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-18 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Complemental strand, 53013363 - 53012860
Alignment:
| Q |
8 |
attgaatctcgtcttatgagtggactatggttctaaggattgcacccttcggtccaatcccgaaacaatattgatgataataatttattttaagaattat |
107 |
Q |
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| T |
53013363 |
attgaatctcgtcttatgagtggactatggttctaaggattgtacccttcgctccaatcccgaaacaatattgatgataataatttattttaagaattat |
53013264 |
T |
|
| Q |
108 |
aaatctttttcttaaggaaaaattagaattcttattttaacaacaagtattcaactatatcaaaaggaagccctata--catataatttcaaatgtctgc |
205 |
Q |
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| T |
53013263 |
aaatctttttcttaaggaaaaattagaattcttattttaacaacaagtattcaactatatcaaaaggaagccctatatacatataatttcaaatgtctgc |
53013164 |
T |
|
| Q |
206 |
ctaacttat--tataaagtagtatcgctataacaatacatacctacatattacgattgacgtgcatcagagaattacctgtgcgagttagtggagtttat |
303 |
Q |
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| T |
53013163 |
ctaacttatattataaagtagtatcactataacaatacatacctacatattacgattgacgtgcatcagagaattacctgtgcgagttagtggagtttat |
53013064 |
T |
|
| Q |
304 |
ggaaatggagcatcatatcactaataacaaaatcttgtaatgattgttacggttgaaaatattgctatctataattttacagtatagcattcactcttta |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
53013063 |
ggaaatggagcatcatatcactaataacaaaatcttgtaatgattgttacggttgaaaatattgctatctataattttacagtacaacattcactcttta |
53012964 |
T |
|
| Q |
404 |
tatttgttcataaaacttaactcaaatcgataaatatcgatattgttagtttaaacattttcgtacgaattccaacccgaaaccatgcttttaagaagca |
503 |
Q |
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| T |
53012963 |
tatttgttcataaaacttaactcaaaccgataaatatcgatattgttagtttaaacattttcgtacgaattccaacctgaaaccatgcttttaagaagca |
53012864 |
T |
|
| Q |
504 |
aatg |
507 |
Q |
| |
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|||| |
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| T |
53012863 |
aatg |
53012860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 545 - 662
Target Start/End: Complemental strand, 53012828 - 53012712
Alignment:
| Q |
545 |
gtaaatatcaaactaagaatttaatttgtttgtgtaaaacaagtttttgtgaaaacgttcaattatattatatgtgccacaaatagagaattgaacatgt |
644 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53012828 |
gtaaatatcaaactaagaatttaatttgtttgtgtaaaacaagtttt-gtgaaaacgttcaattatattatatgtgccacaaatagagatttgaacatgt |
53012730 |
T |
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| Q |
645 |
acacttggtagtgatata |
662 |
Q |
| |
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|||||||||||||||||| |
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| T |
53012729 |
acacttggtagtgatata |
53012712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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