View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-19 (Length: 810)
Name: NF0904-INSERTION-19
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-19 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 38821137 - 38820790
Alignment:
| Q |
18 |
agctttttcaaccttgaatcagatttaaagaacatccaataccattaatggattaacagtttggaacaaatgcaggttctatagatacaaactaggagtt |
117 |
Q |
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| T |
38821137 |
agctttttcaaccttgaatcagatttaaagaacatccagtaccattaatggattaacagtttggaacaaatgcaggttctatagatacaaactagaagtt |
38821038 |
T |
|
| Q |
118 |
gaagatttgaagaatggtgttactggaataggacctgagaaattgttgtataagatattatgggaagtgagatgagactaatgaaagtaacaagaacatg |
217 |
Q |
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| T |
38821037 |
gaagattagaagaatggtgttactggaataggacctgagaaattgttgtataagatattctgggaagtgagaagagactaatgaaagtaacaagaacatg |
38820938 |
T |
|
| Q |
218 |
tttacgctactaataaaaaggatacataacctatttggttgttataaatatatcatttgtacctttagtaattcaattgtttttcaaatttaaatcattt |
317 |
Q |
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| T |
38820937 |
tttacgctactaataaaaaggatacataacctatttggttgttataaatatatcatttgtacctttagtaattcaattgtttttcaaatttaaatcattt |
38820838 |
T |
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| Q |
318 |
acaccgtaaattaaagaactaaaaattttagtattttctaaaccaatt |
365 |
Q |
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| T |
38820837 |
acaccgtaaattaaagaactaaaaattttagtattttctaaaccaatt |
38820790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 496 - 790
Target Start/End: Complemental strand, 38820692 - 38820412
Alignment:
| Q |
496 |
agggcgtagttttattatccactccaattccaattcccaaattttcattttcgtaaccttagagtcagatagttagtactagcttcaatgtgtgaatctt |
595 |
Q |
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| T |
38820692 |
agggcgtagttttattatccactccaattccaattcccaaattttcattttcgtaaccttagagtcagatagttagtactagcttcaatgtgtgaatctt |
38820593 |
T |
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| Q |
596 |
aagctttacttgtaacactatttgaatttgaatttgaatgttaattaatgagtttgctatttcactctagtgatttgtttatgtcccaaatatttttatt |
695 |
Q |
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| T |
38820592 |
aagctctacttgtaacactatttgaattt------gaatgttaattaatgagtttgctatttcactccagtgatttgtttatgtcccaaatatttttgtt |
38820499 |
T |
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| Q |
696 |
gttctgtttcatagagtacatatgtaaccttgagta-tttagcatacgcatgtatcttgattacatttctaaccaaatggttcaaattgaaaatta |
790 |
Q |
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| T |
38820498 |
gttctgttt---------catatgtacccttgagtattttagcatacgcttgtatcttgattacatttctaaccaaatggttcaaattgaaaatta |
38820412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 38820738 - 38820690
Alignment:
| Q |
415 |
cagatagacggcgttaatgctcgtcgttgagaggtttttaggtaaaagg |
463 |
Q |
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| T |
38820738 |
cagatagacggcgttaatgctcgtcgttgagaggtttttaggtaaaagg |
38820690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 38800611 - 38800776
Alignment:
| Q |
31 |
ttgaatcagatttaaagaacatccaataccattaatggattaacagtttggaacaaatgcaggttctatagatacaaactaggagttgaagatttgaaga |
130 |
Q |
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| T |
38800611 |
ttgaatcagatttaaataacatgtagcagcatcaatggagtgatagtttggcacaaatgtaggttttgaagatatgaactagaagttagacttttgaaga |
38800710 |
T |
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| Q |
131 |
atggtgttactggaataggacctgagaaattgttgtataagatattatgggaagtgagatgagact |
196 |
Q |
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| T |
38800711 |
atcgtgttactggaataggacctgataaattgttgtagaagatgttcagggaagtcacatgagact |
38800776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 640
Target Start/End: Complemental strand, 38698390 - 38698325
Alignment:
| Q |
575 |
tagcttcaatgtgtgaatcttaagctttacttgtaacactatttgaatttgaatttgaatgttaat |
640 |
Q |
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| T |
38698390 |
tagcttctatgtgtgaatcaaaagctttaattgtaatactattttaatttgaatattaatgttaat |
38698325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 44015121 - 44015187
Alignment:
| Q |
123 |
tttgaagaatggtgttactggaataggacctgagaaattgttgtataagatattatgggaagtgaga |
189 |
Q |
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| T |
44015121 |
tttgaagaatggagttactggaataggacctgagaagttgttgtaggagatattgagtgaagtgaga |
44015187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 480
Target Start/End: Original strand, 42385270 - 42385300
Alignment:
| Q |
450 |
ttttaggtaaaaggaagagagaataacaaga |
480 |
Q |
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| T |
42385270 |
ttttaggtaaaaggaagagagaataacaaga |
42385300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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