View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-2 (Length: 656)
Name: NF0904-INSERTION-2
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-2 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 32574569 - 32574981
Alignment:
| Q |
1 |
tctagatcaacagtgatgttgattattgtgtctagtgtgaatac--ggattttgtaagcagcaagtttctgggcctgttgattttctttctaaaggtcaa |
98 |
Q |
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| T |
32574569 |
tctagatcaacagtgatattgattattgtgtctagcgtgaatacttggattttgtaagcagcaagtttctggacctgttgattttcattctaaaggtcaa |
32574668 |
T |
|
| Q |
99 |
cccggtgccctatgatattact---atgtgagatttcaggaaagggttttaaatgaaaatatacgagaaaaactcatgtgtcaatttttcatttttaaga |
195 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32574669 |
cccggtgccctatgatattactactatgtgagatttcaggaaagggttttaaatgaaaatatacgagaaaaactcatgtgtcaatttttcatttttaaga |
32574768 |
T |
|
| Q |
196 |
gaatactgaataccaaattaaatgctagtcccaacaaattgtaacagtggatggacattgttaaattcatcagaaaagccttaaattca----------- |
284 |
Q |
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| T |
32574769 |
gaatactgaataccaaattaaatgctagtcccaacaaattgtaacagtggacggacattgttaaattcatcagaaaagccttgaattgaatcaatgtttt |
32574868 |
T |
|
| Q |
285 |
---tccagagctgattaatatctaagtccatactacttgtttttaaggttgttcg----------gttactaagaatgaagagattcggttgcttgtcaa |
371 |
Q |
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| T |
32574869 |
tattccagagctgattaatatctaagttcatactacttgtttttaaggttgttcggttactaacagttactaagaatgaagagattcggttgcttgtcaa |
32574968 |
T |
|
| Q |
372 |
aatcaaaataaga |
384 |
Q |
| |
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| T |
32574969 |
aatcaaaataaga |
32574981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 479 - 656
Target Start/End: Original strand, 32575062 - 32575238
Alignment:
| Q |
479 |
cccatgtcaaaggaaaacccaatttttcaaaagcaaccttggaaatgagtttgagagaaggttgtaatcaataatctttgaatagtagaggaagaaaaag |
578 |
Q |
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| T |
32575062 |
cccatgtcaaaggaaaacccaatttttcaaaagcaaccttggaaatgactttgagagaaggttgtaatcaataatctt-gaatagtagaggaagaaaaag |
32575160 |
T |
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| Q |
579 |
atggaaaatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgacttgtgtagggatagg |
656 |
Q |
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| T |
32575161 |
atggaaaatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgacttgtgtagtgatagg |
32575238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 522 - 646
Target Start/End: Original strand, 32607085 - 32607208
Alignment:
| Q |
522 |
aatgagtttgagagaaggttgtaatcaataatctttgaatagtagaggaagaaaaagatggaaaatgtaagcttatatattcagaaagaaggccaatgga |
621 |
Q |
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||||| ||||||||| ||||||||||||||||| | | |||||||||| |||| |||||||||||||||||||| | ||||| ||| |||| ||||||| |
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| T |
32607085 |
aatgactttgagagagggttgtaatcaataatcct-gcatagtagaggtagaagaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatgga |
32607183 |
T |
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| Q |
622 |
aaaaagattccttgcttgacttgtg |
646 |
Q |
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||| ||||||||||||||||||||| |
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| T |
32607184 |
aaacagattccttgcttgacttgtg |
32607208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 7892260 - 7892329
Alignment:
| Q |
20 |
tgattattgtgtctagtgtgaatac--ggattttgtaagcagcaagtttctgggcctgttgattttcttt |
87 |
Q |
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| T |
7892260 |
tgattattgtgtctagtgtgaatacttggattttgtaagcagaaagtttccaggcctgctgcttttcttt |
7892329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 656
Target Start/End: Original strand, 32568735 - 32568815
Alignment:
| Q |
576 |
aagatggaaaatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgacttgtgtagggatagg |
656 |
Q |
| |
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|||||||||||||||||||||| |||| ||||| || ||||||||||||||||| ||||||| ||||| || |||||| |
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| T |
32568735 |
aagatggaaaatgtaagcttatgggttcaaaaagagggtcaatggaaaaaagattcattgcttgcgttgtgcagtgatagg |
32568815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 38139105 - 38139173
Alignment:
| Q |
20 |
tgattattgtgtctagtgtgaatacg-gattttgtaagcagcaagtttctgggcctgttgattttcttt |
87 |
Q |
| |
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| T |
38139105 |
tgattactgtgtcttgtgtgaatacttgattttgtaagcagcaaatttccggacctgctgattttcttt |
38139173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Original strand, 32574492 - 32574523
Alignment:
| Q |
419 |
aacttgagtccttcatattaattatgcaattt |
450 |
Q |
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| T |
32574492 |
aacttgagtccttcatattaattatgcaattt |
32574523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 597
Target Start/End: Original strand, 5733277 - 5733344
Alignment:
| Q |
528 |
tttgagagaaggttgtaatcaataatctttgaatagtagaggaagaaaaagatggaaaatgtaagcttat |
597 |
Q |
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|||||||| ||| |||||||||||||| | ||||||||| | |||||| |||||||||||||||||||| |
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| T |
5733277 |
tttgagaggaggatgtaatcaataatccta-aatagtagatgtagaaaa-gatggaaaatgtaagcttat |
5733344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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