View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-20 (Length: 725)
Name: NF0904-INSERTION-20
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-20 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 144 - 725
Target Start/End: Original strand, 30348217 - 30348799
Alignment:
| Q |
144 |
gctcaagttttgtgttttcagtggaaatacaaggaagatcgtagataaagaggacagctgattttagtgcatgtttgatattaaggttgatttgttaaaa |
243 |
Q |
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| T |
30348217 |
gctcaagttttgtgttctcattagaaacacaaggaagaggatagataaaaaggacaactgattttagtgcatgatagatatcaaggtggatttgtcagaa |
30348316 |
T |
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| Q |
244 |
tcacgataagtcataaagatttttt-aaaagccacactttatagctcttacaaaatcacaatgactcaccttaattctaacatgcctaccatgatttcaa |
342 |
Q |
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| T |
30348317 |
acacgataagttataaagatttttttaaaaaatacactttatagctcttacaaaatttcagcgactcgccgtgattctaacttatccaccgtgattacaa |
30348416 |
T |
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| Q |
343 |
acatacactcggtcctcctattcgctcaatgccaaggaaccgacataattgatgccaaagctaaaatattcaaccaccatttcctttggtggaatgcaat |
442 |
Q |
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| T |
30348417 |
acacacactcagtcctcctattcactcgatgccaaggaacgaacatagttgatgccaaagctaaaatattcaaccaccatttcctttggtggaatgcaat |
30348516 |
T |
|
| Q |
443 |
ctttgataggtgaagtctggatgaagttatgaccccattcatgaagagaagggaacttttcagcattaattagttccatttctccaagttcttcaagaac |
542 |
Q |
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| T |
30348517 |
ctttgataggtgaagtctggatgaagttatgaccccattcatgaagagaagggaacttttcagcattaattagttccatttctccaagttcttcaagaac |
30348616 |
T |
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| Q |
543 |
attaagccaatatgatatccaaccagctacaatatcaagataccctatcttctctccaccaaaaaactttttcccttgaatctgcttctcaagaaatgca |
642 |
Q |
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| T |
30348617 |
attaagccaatatgatatccaaccagctacaatatcaagataccctatcttctctccaccaaaaaactttttcccttgaatctgcttctcaagaaatgca |
30348716 |
T |
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| Q |
643 |
agtgactccactgcagcttctacagcttttgccttttcttctccttgggccacgcaggctccccatacaccaaaaatacactg |
725 |
Q |
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| T |
30348717 |
agtgactctattgcagcatctacagcttttgccttttcttctccttgagccacacatgctccccatacaccaaaaatacactg |
30348799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 30348098 - 30348198
Alignment:
| Q |
20 |
atctcatcttgatgggatggcccagatcaacgaatgcatgatatcatgcatgcagagcatccaaatccctatttataagtaacattctatctcataccct |
119 |
Q |
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|||||||||||||| ||||||| ||||| |||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30348098 |
atctcatcttgatgagatggcctagatcgacgaatgcataatatcgtgaatgcagagtatccaaatccctatctataagtaacattctatctcataccct |
30348197 |
T |
|
| Q |
120 |
a |
120 |
Q |
| |
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| |
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| T |
30348198 |
a |
30348198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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