View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-21 (Length: 710)
Name: NF0904-INSERTION-21
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-21 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 710
Target Start/End: Complemental strand, 43227812 - 43227111
Alignment:
| Q |
8 |
cttttcttttattataatatgaatagatatatctataagacaattgtgtactaatccattttttacttaaattgacgacttaaagtcaattgttatatta |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227812 |
cttttcttttattataatatgaatagatatatctacaagacaattgtgtactaatccattttttacttaaattgacgacttaaagtcaattgttatatta |
43227713 |
T |
|
| Q |
108 |
aaatagatagattaaagtgcaattcatacttttaattaatcttataacggaggagagtataannnnnnnnnnnnnnnnnnnnnnnnaaatggtagcccat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
43227712 |
aaatagatagattaaagtgcaattcatacttttaattaattttataacggaggagagtataattttttcaatatttttacttttttaaatggtagcccat |
43227613 |
T |
|
| Q |
208 |
ttagtataattaaacttctaataagcttannnnnnnncatgtataacatcccattaacaacttattataaacatgtttatttctcccttgaattaaatct |
307 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
43227612 |
ttagtataattaaacttctaataagcttattttttt-catgtataacatcccattaacaacatattagaaacatgtttatttctcccttgaattaaatct |
43227514 |
T |
|
| Q |
308 |
gcattttgtgnnnnnnnggttcatgtatttcgctataattttactactttctttgatttcaggttgtgactatctatcaatggtcatgagtcgaatgtac |
407 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227513 |
gcattttgtgtttttttggttcatgtatttcgctataattttactactttctttgatttcaggttgtgactatctatcaatggtcatgagtcgaatgtat |
43227414 |
T |
|
| Q |
408 |
aagttaagcattttccttttctttgttaagttggcttttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatca |
507 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227413 |
aagttaagcattttccttttctttgtcaagttggcttttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatca |
43227314 |
T |
|
| Q |
508 |
gttgttttttctccattatgtcatttgtttgtctctccatcgaccatcgtcgcgaacaacgtgaggaagaacgtctcgaacaacctgttccttttaaaat |
607 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
43227313 |
gttgttttttctccattatgtcgtttgtttgtctctccattgaccatcgtcgcgaacaacgcgaagaagaacgtctcgaacaacctgttccttttaaaat |
43227214 |
T |
|
| Q |
608 |
tattattaaggacaaaggggtttagagttattgtttgacattcaccnnnnnnnnntgaatattttgttaagggttgctttgatgtgattgttctctgctt |
707 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || || |
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| T |
43227213 |
tattattaaggacaaaggggtttagacttattgtttgacattcaccaataaaaaatgaatattttgttaaggtttgctttgatgtgattgttctttgttt |
43227114 |
T |
|
| Q |
708 |
ctc |
710 |
Q |
| |
|
||| |
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|
| T |
43227113 |
ctc |
43227111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 30 - 642
Target Start/End: Complemental strand, 43237304 - 43236687
Alignment:
| Q |
30 |
atagatatatctataagacaattgtgtactaatccattttttacttaaattgacgacttaaagtcaattgttatattaaaatagatagattaaagtgcaa |
129 |
Q |
| |
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||||||||||||| ||||||| |||||||||||| |||||| |||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
43237304 |
atagatatatctacaagacaactgtgtactaatcaatttttgacttaaattgacaaattaaagttaattgttatattaaaatagatagattttagtgcaa |
43237205 |
T |
|
| Q |
130 |
ttcatacttttaattaatcttataacggaggagagtataannnnnnnnnnnnnnnnnnnnnnnnaaatggtagcccatttagtataattaaacttctaat |
229 |
Q |
| |
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|||||| |||||||| || |||||| ||||||||||| || |||| |||||||||||| |||||||||||||||||| |
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|
| T |
43237204 |
ttcatatttttaattcattttataaaggaggagagtaaaattttctcaacatttttacttttttaaatagtagcccatttaatataattaaacttctaat |
43237105 |
T |
|
| Q |
230 |
aagcttannnnnnnncatgtataac-atcccattaacaacttattataaacatgtttatttctcccttgaattaaatctgcattttgtg---------nn |
319 |
Q |
| |
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||||||| | | | || || |||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
43237104 |
aagcttatt--------tttttgacaatatcattaacaccatattataaacatgtttaattttcccttgaattaaatctgcattttgtgtttttttttgt |
43237013 |
T |
|
| Q |
320 |
nnnnnggttcatgtatttcgctataattttactactttctttgatttcaggttgtgactatctatcaatgg---tcatgagtcgaatgtacaagttaagc |
416 |
Q |
| |
|
|||| |||||||| ||| |||||| ||||||||| |||| || |||| |||||||||||||||||| | || ||| | ||| |||||||||| |
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|
| T |
43237012 |
tttttggtttatgtatttggctctaatttgactactttccttgaatttaggtcgtgactatctatcaatggccttgttgggtccactgttcaagttaagc |
43236913 |
T |
|
| Q |
417 |
attttccttttctttgttaagttggcttttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttt |
516 |
Q |
| |
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||||| |||| | |||| ||||||||||||||||| |||| ||||| |||||| || | ||||||||||||| |||||||||| |||||||||| |
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| T |
43236912 |
attttattttttgtcattaatttggcttttacttatgtcccaaagtactacggtgtcccttacgaagatagaaggatatttgagtgggcaagttgttttt |
43236813 |
T |
|
| Q |
517 |
tctccattatgtcatttgtttgtctctccatcgaccatcgtcgcgaacaacgtgaggaagaacgtctcgaacaacctgttccttttaaaattattattaa |
616 |
Q |
| |
|
|||||||||| |||||||||||| | | ||||| |||| |||||| |||| || ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
43236812 |
tctccattatatcatttgtttgtatatggatcgattatcgccgcgaagaacgcgaagaagaacgtcttgaacaacccgttccttttaaaattattattaa |
43236713 |
T |
|
| Q |
617 |
ggacaaaggggtttagagttattgtt |
642 |
Q |
| |
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||||||| ||||||||| |||||||| |
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| T |
43236712 |
ggacaaaagggtttagacttattgtt |
43236687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 259 - 701
Target Start/End: Complemental strand, 43237082 - 43236630
Alignment:
| Q |
259 |
cattaacaacttattataaacatgtttatttctcccttgaattaaatctgcattttgtgnnnnnnn---------ggttcatgtatttcgctataatttt |
349 |
Q |
| |
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|||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||| ||| |||||| |
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| T |
43237082 |
cattaacaccatattataaacatgtttaattttcccttgaattaaatctgcattttgtgtttttttttgttttttggtttatgtatttggctctaatttg |
43236983 |
T |
|
| Q |
350 |
actactttctttgatttcaggttgtgactatctatcaatggtcatga---gtcgaatgtacaagttaagcattttccttttctttgttaagttggctttt |
446 |
Q |
| |
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||||||||| |||| || |||| |||||||||||||||||| | || ||| | ||| ||||||||||||||| |||| | |||| ||||||||| |
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| T |
43236982 |
actactttccttgaatttaggtcgtgactatctatcaatggccttgttgggtccactgttcaagttaagcattttattttttgtcattaatttggctttt |
43236883 |
T |
|
| Q |
447 |
acttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctcca |
546 |
Q |
| |
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|||||||| |||| ||||| |||||| || | ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| | | | |
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| T |
43236882 |
acttatgtcccaaagtactacggtgtcccttacgaagatagaaggatatttgagtgggcaagttgttttttctccattatatcatttgtttgtatatgga |
43236783 |
T |
|
| Q |
547 |
tcgaccatcgtcgcgaacaacgtgaggaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttgac |
646 |
Q |
| |
|
|||| |||| |||||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| | | |
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| T |
43236782 |
tcgattatcgccgcgaagaacgcgaagaagaacgtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattgtt-gtc |
43236684 |
T |
|
| Q |
647 |
attcaccnnnnnnnnntgaatattttgttaagggttgctttgatgtgattgttct |
701 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
43236683 |
attcacaagaaaaaaa-gaatattttgttaaggtttgctttgatgtaattgttct |
43236630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 343 - 556
Target Start/End: Complemental strand, 43245165 - 43244951
Alignment:
| Q |
343 |
taattttactactttctttgatttcaggttgtgactatctatcaatggtcatgagtcgaatgtacaagttaagcattttccttttctttgttaagttggc |
442 |
Q |
| |
|
||||||||||||||| |||| || |||| |||||||||||||||||| || ||||||| | ||||||||||||| ||||| | |||||||||| |
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|
| T |
43245165 |
taattttactactttacttgaatttaggtagtgactatctatcaatggctctgggtcgaatactccagttaagcattttgctttttgtcattaagttggc |
43245066 |
T |
|
| Q |
443 |
ttttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagt-tgttttttctccattatgtcatttgtttgtct |
541 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||| |||||| ||||||||||||||| || ||| | |||||||||||||||||| ||||||||| |
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| T |
43245065 |
ttttacttatattccaatgtactacggtgttcctcaagaagatcgaaggaaatttgagttcattagtcttttttttctccattatgtcgggtgtttgtct |
43244966 |
T |
|
| Q |
542 |
ctccatcgaccatcg |
556 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
43244965 |
atggatcgaccatcg |
43244951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 642
Target Start/End: Complemental strand, 43244901 - 43244853
Alignment:
| Q |
594 |
gttccttttaaaattattattaaggacaaaggggtttagagttattgtt |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
43244901 |
gttccttttaaaattattattaaggacaaaaggttttagatttattgtt |
43244853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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