View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0904-INSERTION-25 (Length: 810)
Name: NF0904-INSERTION-25
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-25 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 4 - 551
Target Start/End: Complemental strand, 2988883 - 2988335
Alignment:
| Q |
4 |
aattctcaataaacgggtctgagtacatatgatcattaggtattttaaaataaacaattataagtttcaatagcaaacgagcaccacagttccatatcga |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2988883 |
aattctcaataaacgggtctgagtacatatgatcactaggtatttcaaaataaacaattataagtttcaatagcaaacaagcaccacagttccatatcga |
2988784 |
T |
|
| Q |
104 |
aattggatattaggatgataaaatgaaattaaaaa---------catatttttcctaagagcaaacagtatcacaacttcatgttggcaatagttatctg |
194 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
2988783 |
aattggatattaggatgataaaaagaaattaaaaaaaaaaaaagcatatttttcctaagggctaacagtatcacaacttcatgttggcaatagttatctc |
2988684 |
T |
|
| Q |
195 |
caa----aagatattcgcctcctagtttgaaatcctcacttttgcttaatgtt-gctccatttgatccaccacttgatgctctctgcaagaagccaattg |
289 |
Q |
| |
|
||| ||||||| | |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2988683 |
caagtgaaagatatccacctcctcgtttgaaatcctcgcttttgcttaatgtttgctccatttgatccaccacttgatgctctctgcaagaagccaattg |
2988584 |
T |
|
| Q |
290 |
aacattaagaggcatacttaaattaaaagatataattcatatgatttcacaatgcaaaagttaagaataacacatgtaactacaacttcaagtacaactt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2988583 |
aacattaagaggcatacttaaattaaaagatataattcatatgattccacaatgcaaaagttaagaataacacatgtaactacaactt------------ |
2988496 |
T |
|
| Q |
390 |
caagagattttgatgggaggtataaaagacaagacaaaatcaaaatgtatagtacttcaaagttaaattagacttctacggaaaataaacttggtacctt |
489 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||| |
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| T |
2988495 |
caagagattttgatgggaggtat-aaagacaagacaagatcaaaatgtatagtacttcaaagtcaaattagacttctacagaaaataaatttggttcctt |
2988397 |
T |
|
| Q |
490 |
gaattgagacatagcagatattagtatattatctccaacaatcaacctcaactttgacttga |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2988396 |
gaattgagacatagcagatattagtatattatctccaacaatcaacctcaactttgacttga |
2988335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 548 - 803
Target Start/End: Complemental strand, 2988064 - 2987807
Alignment:
| Q |
548 |
ttgataaatgtaataaagcaaaacattatagttttaaaattcaaatgatgaatctcagaagatgaaagctccaaaatgttgtagataaatatgtcnnnnn |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2988064 |
ttgataaatgtaataaagcaaaacattatagttttaaaattcaaatgatgaatctcagaagatgaaagctccaaaatgttgtagataaatatgtttaaaa |
2987965 |
T |
|
| Q |
648 |
nnnnt--aatagtgggaaattgtacagtagagaaagaattattagatttaaaatacggtaacaaaaattggaattaatatttcctttcacatagaaaact |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
2987964 |
atatataaatagtgggaaattgtacagtagagaaagaattattagattaaaaatacggtaacaaaaattggaattaacatttccttttacatagaaaact |
2987865 |
T |
|
| Q |
746 |
atgaaaacataagaagcaaaactcgtgaaaagncttacggtgtccactatagaatgca |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
2987864 |
atgaaaacataagaagcaaaactcgtgaaaaggcttatagtgtccactgtagaatgca |
2987807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 247 - 382
Target Start/End: Complemental strand, 3292371 - 3292236
Alignment:
| Q |
247 |
ccatttgatccaccacttgatgctctctgcaagaagccaattgaacattaagaggcatacttaaattaaaagatataattcatatgatttcacaatgcaa |
346 |
Q |
| |
|
|||||||||||||||| | || ||||| ||||||| ||| | ||||||| |||||||| | ||||| |||| ||| |||||||||| | |||||||| |
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|
| T |
3292371 |
ccatttgatccaccacctagtggtctcttcaagaagtcaactaaacattaggaggcatagtaaaattgcaagagatagatcatatgattacccaatgcaa |
3292272 |
T |
|
| Q |
347 |
aagttaagaataacacatgtaactacaacttcaagt |
382 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||| |
|
|
| T |
3292271 |
aagtttagcataacatatgtaactacaacttcaagt |
3292236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 687 - 793
Target Start/End: Complemental strand, 3291639 - 3291533
Alignment:
| Q |
687 |
ttagatttaaaatacggtaacaaaaattggaattaatatttcctttcacatagaaaactatgaaaacataagaagcaaaactcgtgaaaagncttacggt |
786 |
Q |
| |
|
|||||||| ||| || || | ||||||||| ||| ||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
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|
| T |
3291639 |
ttagattttaaaaacagttaaaaaaattggtgataacattgccttttacatagaaaactagaaaaacataagaagcaaaactcatgaaaaagcttacggt |
3291540 |
T |
|
| Q |
787 |
gtccact |
793 |
Q |
| |
|
||||||| |
|
|
| T |
3291539 |
gtccact |
3291533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 3125292 - 3125404
Alignment:
| Q |
247 |
ccatttgatccaccacttgatgctctctgcaagaagccaattgaacattaagaggcatacttaaattaaaagatataattcatatgatttcacaatgcaa |
346 |
Q |
| |
|
||||||||||||||| || || |||| |||||||||||| | || |||| |||||||| | ||||| |||| ||| |||||||||| ||||||| || |
|
|
| T |
3125292 |
ccatttgatccaccatctggtggtctcagcaagaagccaactaaatattaggaggcataatcaaattgcaagagatagatcatatgattacacaatgtaa |
3125391 |
T |
|
| Q |
347 |
aagttaagaataa |
359 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
3125392 |
aagttaagcataa |
3125404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 802
Target Start/End: Original strand, 3128405 - 3128471
Alignment:
| Q |
736 |
atagaaaactatgaaaacataagaagcaaaactcgtgaaaagncttacggtgtccactatagaatgc |
802 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||| || ||| ||||| ||||||| |||||||||| |
|
|
| T |
3128405 |
atagtaaactaagaaaacataagaggcaaaactcatggaaaagcttacagtgtccaatatagaatgc |
3128471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 264 - 415
Target Start/End: Original strand, 12413746 - 12413891
Alignment:
| Q |
264 |
tgatgctctctgcaagaagccaattgaacattaagaggcatacttaaattaaaagatataattcatatgatttcacaatgcaaaagttaagaataacaca |
363 |
Q |
| |
|
||||||||||| ||||||| |||| || |||| |||||||| | ||||| |||| ||| || |||||||| || ||||| |||||||||||||||| | |
|
|
| T |
12413746 |
tgatgctctctacaagaagataattaaaaattaggaggcataatcaaattgcaagagatagtttatatgattccataatgcgaaagttaagaataacata |
12413845 |
T |
|
| Q |
364 |
tgtaactacaacttcaagtacaacttcaagagattttgatgggaggtataaa |
415 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
12413846 |
tgtaacttcaactt------caacttcaagtgattttgatgggaggtataaa |
12413891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 12323637 - 12323556
Alignment:
| Q |
328 |
atatgatttcacaatgcaaaagttaagaataacacatgtaactacaacttcaagtacaacttcaagagattttgatgggaggtataaa |
415 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
12323637 |
atatgattccataatacaaaagttaagaataacatatgtaactgcaactt------caacttcaagtaattttgatgggaggtataaa |
12323556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 38263138 - 38263033
Alignment:
| Q |
273 |
ctgcaagaagccaattgaacattaagaggcatacttaaattaaaagatataattcatatgatttcacaatgcaaaagttaagaataacacatgtaactac |
372 |
Q |
| |
|
|||||||||| ||||| |||||||| || |||| | |||||| |||| ||| ||||||||||| ||||||||||||||||| |||||| |||||| | | |
|
|
| T |
38263138 |
ctgcaagaaggcaatt-aacattaaaagacatagtcaaattacaagaaatagttcatatgattctacaatgcaaaagttaagcataacatatgtaattgc |
38263040 |
T |
|
| Q |
373 |
aacttca |
379 |
Q |
| |
|
||||||| |
|
|
| T |
38263039 |
aacttca |
38263033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 382
Target Start/End: Original strand, 38205850 - 38205960
Alignment:
| Q |
272 |
tctgcaagaagccaattgaacattaagaggcatacttaaattaaaagatataattcatatgatttcacaatgcaaaagttaagaataacacatgtaacta |
371 |
Q |
| |
|
||||||| ||| ||||| || ||||| | ||||| | ||||| |||| ||| |||||||||||| |||||||| |||||||| |||||| |||||| | |
|
|
| T |
38205850 |
tctgcaaaaagtcaattaaatattaaaatgcataatcaaattgcaagagatatttcatatgattttacaatgcataagttaagcataacatatgtaattg |
38205949 |
T |
|
| Q |
372 |
caacttcaagt |
382 |
Q |
| |
|
||||||||||| |
|
|
| T |
38205950 |
caacttcaagt |
38205960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 18780100 - 18780045
Alignment:
| Q |
134 |
aaaaacatatttttcctaagagcaaacagtatcacaacttcatgttggcaatagtt |
189 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
18780100 |
aaaaacgtatttctcctaggagcaaacaatatcacaacttcatgttgacaaaagtt |
18780045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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