View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-29 (Length: 308)
Name: NF0904-INSERTION-29
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-29 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 37657198 - 37657346
Alignment:
| Q |
100 |
aaggttcggttgagagggtattccgcgttagtttt-tactaaatgcaaaaaataagttgatagctggcctatcaaccaccaagtctaagttcaattttga |
198 |
Q |
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| T |
37657198 |
aaggttcggttgagagggtattccgcgttagttttttactaaatgcaaaaattaagttgatagctggcctatcaaccaccaagtctaagttcaattttga |
37657297 |
T |
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| Q |
199 |
ataaaaggtactagctcttttacttgactcataatatttagacattaat |
247 |
Q |
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| T |
37657298 |
ataaaaggtactagctcttttactagactaataatatttagacattaat |
37657346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 37657341 - 37657369
Alignment:
| Q |
272 |
attaatcatgttaaaaatttaattaactt |
300 |
Q |
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| T |
37657341 |
attaatcatgttaaaaatttaattaactt |
37657369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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