View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0904-INSERTION-31 (Length: 455)
Name: NF0904-INSERTION-31
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 58 - 451
Target Start/End: Original strand, 7716273 - 7716666
Alignment:
| Q |
58 |
gcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctact |
157 |
Q |
| |
|
|||||| |||||| ||||||| | ||||||| ||||||||| |||||||||| |||||||| ||||||||||| || || | ||||||||||||| |
|
|
| T |
7716273 |
gcaattatcgatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttataattgagtatgaaacctatctgaagatactctact |
7716372 |
T |
|
| Q |
158 |
ttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaac |
257 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7716373 |
ttggaatgattgactgctagctgtaatatcttctctgtgacattttcaagcattactttcctgacatgtttgtgttgtggaattgaaactagattataac |
7716472 |
T |
|
| Q |
258 |
aatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagattatttaa |
357 |
Q |
| |
|
|||| ||| ||||| ||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7716473 |
aatcttgaatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaa |
7716572 |
T |
|
| Q |
358 |
cccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaatta |
451 |
Q |
| |
|
| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| || || ||||||| |
|
|
| T |
7716573 |
ctcggaaagaaatatatctgtaagtgacgtacaaaatgatgatgagttatcactattgttatcattgactatgaactctaggcgagccaaatta |
7716666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 58 - 447
Target Start/End: Complemental strand, 7496703 - 7496314
Alignment:
| Q |
58 |
gcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctact |
157 |
Q |
| |
|
|||||| |||||| ||||||| | ||||||| ||||||||| ||||| |||| |||||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
7496703 |
gcaattttcgatacacaattcagacagtgtacttagatgttgaaagacaccacagagagatttaaaattgagtatgaaacctatatcaagatactctact |
7496604 |
T |
|
| Q |
158 |
ttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaac |
257 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7496603 |
ttggaatgattgactgcttgctgtaatatcttctctgtgacatttgaaagcattactttcctgacatgtttgtgttgtggaattgaaactagattaggac |
7496504 |
T |
|
| Q |
258 |
aatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagattatttaa |
357 |
Q |
| |
|
||| ||||||||| |||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7496503 |
aatatttaatcgataatctttcaagactctgaaactgatgacgacaaccccttgagatttcttcttcgctacaattacaccatcctttaagattatttaa |
7496404 |
T |
|
| Q |
358 |
cccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaa |
447 |
Q |
| |
|
| | ||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
7496403 |
ctgaaagagagctatatctgtgagtgacgcacaaaatgatgatgagttatcactattgctatcattcactatgtactccaggcaaggcaa |
7496314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 58 - 449
Target Start/End: Original strand, 7720103 - 7720494
Alignment:
| Q |
58 |
gcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctact |
157 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| || |||||| |||||| | |
|
|
| T |
7720103 |
gcaattgaggatacgcaattcacagagtgtacctagatgttgaaagactccactaagagatttcaaattgagtatggattctatctcaagagactctagt |
7720202 |
T |
|
| Q |
158 |
ttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaac |
257 |
Q |
| |
|
|||||||||||||||||| | |||| ||| ||||| ||||| | ||||||||||| ||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
7720203 |
ttggaatgattgactgctggcggtaacatcgtctctctgacctctctaagaattacttccctgatatatgtgtgttgtggaattgaaactagattacaac |
7720302 |
T |
|
| Q |
258 |
aatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagattatttaa |
357 |
Q |
| |
|
|| ||||||| ||||| |||||||||| | ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
7720303 |
aaacagaaatacataagctttcaagactgttaaactgatgacaacaaccccttgagatttcttcttcgctacagttacaccatccttttagatttgttaa |
7720402 |
T |
|
| Q |
358 |
cccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaat |
449 |
Q |
| |
|
||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||| |
|
|
| T |
7720403 |
cccaaaaagaaatatatctttaagtgacgcacaaaatgatgatgagttatcactattgttatcattaacaatgtactctaggcatggcaaat |
7720494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 57 - 450
Target Start/End: Complemental strand, 7530430 - 7530037
Alignment:
| Q |
57 |
tgcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctac |
156 |
Q |
| |
|
|||||||| ||||| ||||||| | ||||||| ||||||||| |||||||||| |||||||| | ||||||||||||| || | |||||||||||| |
|
|
| T |
7530430 |
tgcaattggtgatatacaattcatacagtgtacttagatgttgaaagactccacagagagatttaagattgagtatggaatttatctgaagatactctac |
7530331 |
T |
|
| Q |
157 |
tttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaa |
256 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7530330 |
tttggaatgattgactgcttgctgtaatatcgtctctctgacctctctaagaattacttccctgatatgtttgtgttgtggaattgaaactagattacaa |
7530231 |
T |
|
| Q |
257 |
caatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagattattta |
356 |
Q |
| |
|
||| ||||||| ||||| ||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
7530230 |
caaccagaaattgataatcttttaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagatttgtta |
7530131 |
T |
|
| Q |
357 |
acccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaatt |
450 |
Q |
| |
|
|| |||| ||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
7530130 |
acagaatgagaactatatctgtgagtgacgcacaagatgatgatgagttatcactattgctatcattcactatgtactccaggcaaggcaaatt |
7530037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 58 - 451
Target Start/End: Complemental strand, 7484304 - 7483911
Alignment:
| Q |
58 |
gcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctact |
157 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||| |||| |||||||| |
|
|
| T |
7484304 |
gcaattgaggatacgcaattcacagagtgtacctagatgttgaaagactccactaagagatttcaaattgagtatggattctatattaagagactctact |
7484205 |
T |
|
| Q |
158 |
ttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaac |
257 |
Q |
| |
|
||||||||||||||| | | |||||||| | | || || ||||| ||||| ||||| || | |||||||||||||||||||||| ||| ||| |
|
|
| T |
7484204 |
ttggaatgattgactagttgctgtaatatatctgaagatactctacaaagatctacttccctgatatatgtgtgttgtggaattgaaactagcttataac |
7484105 |
T |
|
| Q |
258 |
aatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagattatttaa |
357 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7484104 |
aatcattaatcaataaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagattatttaa |
7484005 |
T |
|
| Q |
358 |
cccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaatta |
451 |
Q |
| |
|
| | |||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | ||||||||||||| |
|
|
| T |
7484004 |
ctgaaagagaactatatatgtgagtgacgcacaaaatgatgatgagttatcactattgctatcattgattatgtactccaggcaaggcaaatta |
7483911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 58 - 451
Target Start/End: Complemental strand, 7522361 - 7521968
Alignment:
| Q |
58 |
gcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctact |
157 |
Q |
| |
|
||||||| ||||| ||||||| | ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| || | |||| ||||| | |
|
|
| T |
7522361 |
gcaattgacgatacacaattcagacagtgtacttagatgttgaaagactccactgagagatttcaaattgagtatggattctatctgtagatcctctagt |
7522262 |
T |
|
| Q |
158 |
ttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaac |
257 |
Q |
| |
|
||||||||||||||| || | |||||||| | | || || ||||| ||||| ||||| || | |||||||||||||||||||||| ||| ||| |
|
|
| T |
7522261 |
ttggaatgattgactacttgctgtaatatatctgaagatactctacaaagatctacttccctgatatatgtgtgttgtggaattgaaactagcttataac |
7522162 |
T |
|
| Q |
258 |
aatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagattatttaa |
357 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
7522161 |
aatcattaatcattaaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagattagttaa |
7522062 |
T |
|
| Q |
358 |
cccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaatta |
451 |
Q |
| |
|
| | |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7522061 |
ctgaaagagaactatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactccagacaaggcaaatta |
7521968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 57 - 349
Target Start/End: Original strand, 7126836 - 7127128
Alignment:
| Q |
57 |
tgcaattgtcgatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctac |
156 |
Q |
| |
|
||||||||| |||| ||||| |||| ||| ||| ||||||||| |||| |||||||||||||| |||||| |||||| | || | |||||||||||| |
|
|
| T |
7126836 |
tgcaattgtggatacgcaatgcacacagtctacttagatgttgaaagagtccactgagagatttcaaattcagtatgtcatttatcttaagatactctac |
7126935 |
T |
|
| Q |
157 |
tttggaatgattgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaa |
256 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
7126936 |
ttttgaatgattgactgcttgttgtaatatcttctctgtgacatttgaaagaattacattcctgacatgtttgtgttgtggaattgaaactaggttagga |
7127035 |
T |
|
| Q |
257 |
caatcagaaatcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttaga |
349 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7127036 |
caatattcaatcgataatctttcaagactctgaaactgatgacaacaaccccttgagatctcttcttcgctacacttacaccatccttttaga |
7127128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 67 - 351
Target Start/End: Complemental strand, 7502884 - 7502600
Alignment:
| Q |
67 |
gatatgcaattcacagagtgtacctagatgttgtaagactccactgagagattccaaattgagtatggaaaacatatcaagatactctactttggaatga |
166 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||| | |||||||||||||||||||| | |
|
|
| T |
7502884 |
gatacgcaattcacacagtgtacttagatgttgaaagactccactaagagatttcaaattgagcatgaaaaacatctgaagatactctactttggaataa |
7502785 |
T |
|
| Q |
167 |
ttgactgctcgttgtaatatcttctctgtgacccttgaaagaattactttcctgacatgtttgtgttgtggaattgaaactagattacaacaatcagaaa |
266 |
Q |
| |
|
|||||| || | | ||||||||||||||||||| || |||| |||||||| ||| || | ||||||| |||||||||||||| ||| |||||||| || |
|
|
| T |
7502784 |
ttgactacttgctttaatatcttctctgtgacctttctaagagttactttcttgatatatgtgtgttgaggaattgaaactagcttataacaatcatcaa |
7502685 |
T |
|
| Q |
267 |
tcgataaggtttcaagactctcaaactgatgacaacagccctttgagatttcttcttcgctacacttacaccatccttttagatt |
351 |
Q |
| |
|
|||||||| ||||| ||||| | ||||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
7502684 |
tcgataagtattcaatactctgagactgatgactacaaccccttgagatttcttctttgctacagttacaccatccttttagatt |
7502600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7521958 - 7521907
Alignment:
| Q |
11 |
aggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaat |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7521958 |
aggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaat |
7521907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 7496301 - 7496251
Alignment:
| Q |
10 |
gaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgca |
60 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
7496301 |
gaggcgtttgacatgcaacagtgagagtttgaaatattgcaatcttgtgca |
7496251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 7720515 - 7720556
Alignment:
| Q |
20 |
acatgcaacattgagagtttaaaatattgtaatcttgtgcaa |
61 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7720515 |
acatgcaacattgagagtttgaaatattgtaatcttgtgcaa |
7720556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7127230 - 7127289
Alignment:
| Q |
1 |
aatcatacagaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgca |
60 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |||||||| |||||| |||| |
|
|
| T |
7127230 |
aatcatatagaggcgtttgacatgcaacagtgagagttcgaaatattgcaatcttttgca |
7127289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 10477914 - 10477964
Alignment:
| Q |
83 |
agtgtacctagatgttgtaagactccactgagagattccaaattgagtatg |
133 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
10477914 |
agtgtacttagatgttgaaagactccacagagagatttaaaattgagtatg |
10477964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 69 times since January 2019
Visitors: 6695