View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-33 (Length: 545)
Name: NF0904-INSERTION-33
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-33 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 127 - 545
Target Start/End: Complemental strand, 40065651 - 40065233
Alignment:
| Q |
127 |
aattgttcaatctccacaagcttcagttactcacactaccatgaataatgtttttagaaacataaataaggtcgttgacagagtaatgttggatggtatg |
226 |
Q |
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| T |
40065651 |
aattgttcaatctccacaagcttcagttacacacactaccatgaataatgtttttagaaacataaataaggccgttgacagagtaatgttggatggtatg |
40065552 |
T |
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| Q |
227 |
gttgtcaaagaccatcatcatccatgcacaaatatcaggaagagacctgcagataatcttgatgattccagaaaacctatcaaggtatccaatatagaag |
326 |
Q |
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| T |
40065551 |
gttgtcaaagaccatcatcatccatgcacaaatatcaggaagagacctgcagataatcttgatgattccagaaaacctatcaaggtatccaatatagaag |
40065452 |
T |
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| Q |
327 |
tgagagaaaacatgagtcgcatgccaaagttgactcgagaaaactcaaatgtagaattgcaatgtaacaaaagagcagtggtacttgatccacaagtgga |
426 |
Q |
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| T |
40065451 |
tgagagaaaacatgagtcgcatgccaaagttgactcgagaaaactcaaatgtagaattgcaatgtaacaaaagagcagtggtacttgatccacaagtgga |
40065352 |
T |
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| Q |
427 |
gattgcgagaagtaggtgttgccaaaatgtggcacaaaatctaaatcctacaagttatcctgctgttgattcttttaaaccgaacggcacgataagatct |
526 |
Q |
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| T |
40065351 |
gattgcgagaagtaggtgttgccagaatgtggcacaaaatctaaatcctacaagttatcctgctgttgattcttttaaaccgaacggcacgataagatct |
40065252 |
T |
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| Q |
527 |
agtcctgtccgacttggtc |
545 |
Q |
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| T |
40065251 |
agtcctgtccgacttggtc |
40065233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 40065236 - 40065114
Alignment:
| Q |
8 |
ggtcctaaaagagctaagcacatcctaaaatcctcttgaaatatggatcaagatagataaagagtgatccattttgccatgctctcatttgtgactactg |
107 |
Q |
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| T |
40065236 |
ggtcctaaaagagctaagcacattctaaaatcctcttgaaatatggatcaagatagataaagagtgatccattttgccatgctctcatttgtgactactg |
40065137 |
T |
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| Q |
108 |
actttgataggaatctagaaatt |
130 |
Q |
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| T |
40065136 |
actttgataggaatctagaaatt |
40065114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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