View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-34 (Length: 616)
Name: NF0904-INSERTION-34
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 42125658 - 42126273
Alignment:
| Q |
1 |
taaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125658 |
taaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaact |
42125757 |
T |
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| Q |
101 |
tcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggttttt |
200 |
Q |
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| T |
42125758 |
tcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggttttt |
42125857 |
T |
|
| Q |
201 |
ggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcccaagaaaatggtatatagcatcagactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125858 |
ggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcccaagaaaatggtatatagcatcagactc |
42125957 |
T |
|
| Q |
301 |
ggttttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatatatcgtgactcgtgg |
400 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42125958 |
ggttttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatagatcgtgactcgtgg |
42126057 |
T |
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| Q |
401 |
agaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaa |
500 |
Q |
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| T |
42126058 |
acaattattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaa |
42126157 |
T |
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| Q |
501 |
gtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaacttcatgttcaaataacacaactgctatcatatggaatgatgttttgagcaa |
600 |
Q |
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| T |
42126158 |
gtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaatttcatgttcaaataacacaactgctatcatatggaatgatgttttgagcaa |
42126257 |
T |
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| Q |
601 |
taaagcatggattctt |
616 |
Q |
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| T |
42126258 |
taaagcatggattctt |
42126273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 24928976 - 24929134
Alignment:
| Q |
20 |
gtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatggtagcat |
119 |
Q |
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||||||| | ||||||| ||||| ||||||||||| || ||||||| ||||||||||| ||||| |||||| | |||||||||||||||||||||| |
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| T |
24928976 |
gtgagagcgatgagtattagaccgtgaagcaagtaggcgatggtaaatgtaatggcaaaggtgatggggtttgatgggacttcagaaaacatggtagcat |
24929075 |
T |
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| Q |
120 |
atgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
178 |
Q |
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| T |
24929076 |
atgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
451 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
523 |
Q |
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| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 526
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
450 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
526 |
Q |
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| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 522
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
456 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
522 |
Q |
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| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 20809087 - 20809151
Alignment:
| Q |
460 |
tgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaaca |
524 |
Q |
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||||||||||| |||||| |||| |||||| | |||| ||||||| ||||||||| |||| |||| |
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| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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