View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-6 (Length: 542)
Name: NF0904-INSERTION-6
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 16087393 - 16087091
Alignment:
| Q |
1 |
gagtcattatgttggaacgtataatcatattataatgtaacgtgtaatgttctttgaaccgagcgcctgactaatatgttaaacatgtttgctttttaaa |
100 |
Q |
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| T |
16087393 |
gagtcactatgttggaacatataatcatattataatgtg----gtaaagttctttgaaccgagcgcctgactaatatgttaaacatgtttgctttttaaa |
16087298 |
T |
|
| Q |
101 |
gctttgctggtttataggcctgtgattctagcgtgatatgatctaattaattggtttgtgtgttatcagctgtagaaaatttattgcaattaataataga |
200 |
Q |
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| T |
16087297 |
gctttgctggtttataggcttgtgattctagcgtgatatgatctaattaattggtttgtgtgttatcagctgtagaaaatttattgcaatt---aataga |
16087201 |
T |
|
| Q |
201 |
tttggccaagtttatatatgtgtctatctgtatagaatagattctgtatatctgaaataagtttgtttaattaagtaaactgctttcattatcctcccat |
300 |
Q |
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| T |
16087200 |
tttggccaagtttatatatgtgtctatctgtatagaatagattctgtatatctgaaataagtttgt----ttaagtaaactgctttcattatcctcccat |
16087105 |
T |
|
| Q |
301 |
gagaaggatgtggt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
16087104 |
gagaaggatgtggt |
16087091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 358 - 524
Target Start/End: Complemental strand, 16087045 - 16086876
Alignment:
| Q |
358 |
ttaaatttgatgtccacaaatgaaattttaggatgaaggtatttgaattgatgaatttgtttgtgtcttttat-aaagcaaattagcttgttggaatacg |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
16087045 |
ttaaatttgatgtccacaaatgaaattttaggatgaaggtatttgaattgatgaatttgtttgtgttttttataaaagcaaataagcttgttggaatacg |
16086946 |
T |
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| Q |
457 |
tacaatagctctcgaggtattagttcagttcttgtttttt-aggattaatgtgtg-ttgatactatgagc |
524 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
16086945 |
tacaatatctctcgaggtattagttcagttcttgttttttaaggattaatgtgtgtttgatactatgagc |
16086876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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