View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0904-INSERTION-7 (Length: 727)
Name: NF0904-INSERTION-7
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0904-INSERTION-7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 5366423 - 5366787
Alignment:
| Q |
1 |
catcaataatctaatttgattcactctagttgttgttgcacaaaggtattgcaatattgcatgtaaagtgtttttaatggtgatggtggaacaatttgga |
100 |
Q |
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| T |
5366423 |
catcaataatctaatttgattcactctagttgttgttgcacaaaggtattgcaatattgcatgtaaagtgtttttaatggtgatggtggaacaatttgga |
5366522 |
T |
|
| Q |
101 |
ttgtagttaagttaatttggaggggtgaagtaggaatttaaaatttttatggagagtggtggggtggggtgaggtgacgagaaatgaatgaattatgatt |
200 |
Q |
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| T |
5366523 |
ttgtagttaagttgatttggaggggtgaagtaggaatttaaaaaatttatggagagtggtggggtgg-----gatgacgagaaatgaatgaattatgatt |
5366617 |
T |
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| Q |
201 |
tgctttgctcttcnnnnnnnnnagagaaaggaagggaggtgggctagttggttatattgtaagttttattgggatgctgatttttcttttctatattcaa |
300 |
Q |
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| T |
5366618 |
tgctttgctcttctttttttttagagaaaggaagggaggtggggtagttggttatattgtaagttttattgggatgctgatttttcttttctttattgaa |
5366717 |
T |
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| Q |
301 |
agggttagagtcatctccttacaaatttgtttttgtaagggttgagatagttttggtctaaattttaatc |
370 |
Q |
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| T |
5366718 |
agggttagagtcatctccttacaaatgtgtttttgtaagggttgagatactctaggtctaaattttaatc |
5366787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 396 - 727
Target Start/End: Original strand, 5366826 - 5367160
Alignment:
| Q |
396 |
tcgtcattattatcgaattatctgagtcatattcaattgtgaattagataaatattttaagaattgtaaagtataaatatactaatgttttataatgtgt |
495 |
Q |
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| T |
5366826 |
tcgtcattattatcgaattatctgagtaatattcaattctgaattagataaatatgttaagaattgtaaagtataaatatactaat--tttataatgtgt |
5366923 |
T |
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| Q |
496 |
ttatatttaggagtactttttattacaagtcgattttatgcgggttgagtaggataaaatccaaattttagaagaagataaaaaa-gtagaataggtgtg |
594 |
Q |
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| T |
5366924 |
ttatatttaggaggatatttcattacaagtctattttatgtgggttgagtcggataaaatccaaattctagaagaagataaaaaaagtagaataggtgtg |
5367023 |
T |
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| Q |
595 |
tatggatatggaga--gagtatagtattaattgactaagaagattttattggtcaataagcaaatggcttggtaggagatatggcctagctgatgct-aa |
691 |
Q |
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| T |
5367024 |
tatggatatggagagagagtatagtattaattgactaagaagtgtttattggtcaataagcaaatggcttggtaggagatatggcctagctgatgctaaa |
5367123 |
T |
|
| Q |
692 |
aaaggaattgtgtctgac-aaagatgaaaattatcaa |
727 |
Q |
| |
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| T |
5367124 |
aaaggaattgtgtctgacaaaagatgaaaattatcaa |
5367160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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