View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0904-INSERTION-8 (Length: 585)

Name: NF0904-INSERTION-8
Description: NF0904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0904-INSERTION-8
NF0904-INSERTION-8
[»] chr2 (1 HSPs)
chr2 (1-585)||(25725521-25726106)


Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 25725521 - 25726106
Alignment:
Q  1 cttacctggagtttgcccctccttaaattgaaaagcgtatcagatcatgatctgtgacaatttttcatcagcattccatttcctggggatttcttggtca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  25725521 cttacctggagtttgcccctccttaaattgaaaagcgtatcagatcatgatctgtgacaatttttcatcagcattccatttcctggagatatcttggtca 25725620  T
Q  101 acttgaaatgtgtatgtatattgtgaaatagtttttattttgtagtatcttcaagaggttcggccataagtatcgcgaagttggattttccccaagttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725621 acttgaaatgtgtatgtatattgtgaaatagtttttattttgtagtatcttcaagaggttcggccataagtatcgcgaagttggattttccccaagttat 25725720  T
Q  201 ctcttctgttgttttaatgagctaataacttcaaagaaattgcagtcaaaaaattgccgtaagaaaagagtaaaattttccattcttttttcttgtacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25725721 ctcttctgttgttttaatgagctaataacttcaaagaaattgcagtcaaaaaattaccgtaagaaaagagtaaaattttccattcttttttcttgtacaa 25725820  T
Q  301 aagttctttcttttgacttcgaaagtactttgggttccaaagcgtctcatggttgtaagagatcttgtagcctcatcaaatattttccctgaaccatgga 400  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725821 aagttctttcttttgacttcgaaagtactctgggttccaaagcgtctcatggttgtaagagatcttgtagcctcatcaaatattttccctgaaccatgga 25725920  T
Q  401 aatgaaatattttcttgcagaggtgctgttaatccaaaccgtcttctatcgtggagggtttatgatgcattatatgtcatgattaattatactgcaaaat 500  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725921 aatgaaatattttcttgcagagatgctgttaatccaaaccgtcttctatcgtggagggtttatgatgcattatatgtcatgattaattatactgcaaaat 25726020  T
Q  501 gttagaggccattttacnnnnnnnattttataaatttctgaggtatttgcttacttctga-gagaggtattaatcaacttcctctg 585  Q
    |||| ||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25726021 gttacaggccattttactttttttattttataaatttctgaggtatttgcttacttctgaggagaggtattaatcaacttcctctg 25726106  T

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