View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0905_high_17 (Length: 304)
Name: NF0905_high_17
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_high_17 |
 | |
|
| [»] scaffold0280 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0280 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 9844 - 9552
Alignment:
| Q |
1 |
attcgatattcaataatccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggccaa |
100 |
Q |
| |
|
|||| ||||||||||| || ||||||| |||||||| |||||||||||| ||| ||||| ||| | |||| ||||| |||||| |||||||||||||| |
|
|
| T |
9844 |
attcaatattcaataaccccaatttctaaaccctaaaacaattatcacagcattcctatcccaaatccataactcagtgaatttt-caaattggggccaa |
9746 |
T |
|
| Q |
101 |
gaatgatagaattacaatgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9745 |
gaatgatagaattacaatgtacctgctgagccgcaacgctacgagtaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaac |
9646 |
T |
|
| Q |
201 |
atcaccatcatgttcctcaagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataa |
294 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9645 |
atcaccatcatgttccttaagagcaacaccaagcatatttttggcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataa |
9552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 21910655 - 21910365
Alignment:
| Q |
1 |
attcgatattcaataatccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggccaa |
100 |
Q |
| |
|
|||||||||||| |||||| | |||| |||||||||||||||||||||| ||| |||||| ||| |||| ||| | ||| ||||||||| |||| || |
|
|
| T |
21910655 |
attcgatattcattaatcccattttccgaaccctaacacaattatcacagcatttctatcccaaattcataactcaatgaatgtttcaaattagggc-aa |
21910557 |
T |
|
| Q |
101 |
gaatgatagaattacaatgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaac |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21910556 |
caatgatagaattgcaatgtacctgttgagccgcaacgctacgactaggaaattcataagtaggattagcataagtattatcaaggcaaacaacatcaac |
21910457 |
T |
|
| Q |
201 |
atcaccatcatgttcctcaagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtat |
292 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| | | | |||||||||||||||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
21910456 |
aacaccatcatgttcctttagagcaacaccaagcatttctctagcaatccttgccttctcacaactaccttcccaacgaaaatcaccggtat |
21910365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 212 times since January 2019
Visitors: 6702