View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0905_high_2 (Length: 509)
Name: NF0905_high_2
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 73 - 358
Target Start/End: Complemental strand, 36247963 - 36247673
Alignment:
| Q |
73 |
cggttatgaagggtgcttttacactgtttggttggtgagaggaaaagtcaaatatgtt-gttgtaaaattttagccaatgaaaatatgacacgtcattga |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36247963 |
cggttatgaagggtgcttttacactgtttggttggtgaaaggaaaagtcaaatatgtttgttgtaaaattttggccaatgaaaatatgacacgtcattga |
36247864 |
T |
|
| Q |
172 |
tttggaggatgtaaggtgagcttgtttgtcgtgtttttgtgattggctatatttggagcgtgatttgcggtgtaaggg----tacatgagtttggtctct |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36247863 |
tttggaggatgtaaggtgagcttgtttgtcgtgtttttgtgattggctagatttggagcgtgatttgcggtgtaaggaaggctacatgagtttggtctct |
36247764 |
T |
|
| Q |
268 |
nnnnnnncaaggataggaaattagaatttaagttatacaatgtttgatctaaaaaccttgttttacaaacgtgataaattaggatcgtact |
358 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
36247763 |
aaaaaaacaaggataggaaatcagaatttaagttatacaatgtttgatctaaaaaccttgttttacaaacatcataaattaggatcgtact |
36247673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 490
Target Start/End: Complemental strand, 36247671 - 36247598
Alignment:
| Q |
416 |
ttaaacataaaaaggttgtataaaagagtaaaagnnnnnnnntagttggaatgtacttatgtgtcataaatatat |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
36247671 |
ttaaacataaaaaggttgtataaaagagtaaaag-aaaaaaatagttggaatgcacttatgtgtcacaaatatat |
36247598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 801 times since January 2019
Visitors: 6696