View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_high_6 (Length: 429)
Name: NF0905_high_6
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 30767328 - 30767751
Alignment:
| Q |
10 |
caatgtccattaatcttgatagagaatgatccatccat-taataagatgcatgaaagaaatttaaaaaggaacgaggagtgggagaata---attttgct |
105 |
Q |
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| T |
30767328 |
caatgtccattaatcttgatagagaatgatccatccatataataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaataataattttgct |
30767427 |
T |
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| Q |
106 |
gagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgatagaaaactttgctc |
205 |
Q |
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| T |
30767428 |
gagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgatagaaaactttgctc |
30767527 |
T |
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| Q |
206 |
agttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcggaaacctgctaatccatc |
305 |
Q |
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| T |
30767528 |
agttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaacctgctaatccatc |
30767627 |
T |
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| Q |
306 |
agaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatgaacctctgaagaagaatccataggaatctcattccatgtt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767628 |
agaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatgaacctctgaagaagaatccataggaatctcattccatgtt |
30767727 |
T |
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| Q |
406 |
ctaacagaatgcgaaaaatttgac |
429 |
Q |
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| T |
30767728 |
ctaacagaatgcgaaaaatttgac |
30767751 |
T |
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