View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0905_high_8 (Length: 395)

Name: NF0905_high_8
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0905_high_8
NF0905_high_8
[»] chr2 (2 HSPs)
chr2 (29-385)||(35850794-35851150)
chr2 (34-383)||(35841182-35841528)
[»] chr1 (6 HSPs)
chr1 (149-387)||(13313413-13313651)
chr1 (123-382)||(13314048-13314307)
chr1 (209-337)||(13300924-13301051)
chr1 (245-342)||(13305578-13305675)
chr1 (168-337)||(13305377-13305536)
chr1 (168-234)||(13305673-13305739)


Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 29 - 385
Target Start/End: Original strand, 35850794 - 35851150
Alignment:
Q  29 acaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35850794 acaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgat 35850893  T
Q  129 tgatccaattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcac 228  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35850894 tgatccaattcattcttccgtcgaatcaaatcgtcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcac 35850993  T
Q  229 cgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35850994 cgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaat 35851093  T
Q  329 caatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctg 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35851094 caatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctg 35851150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 34 - 383
Target Start/End: Original strand, 35841182 - 35841528
Alignment:
Q  34 aatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatc 133  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||    
T  35841182 aatccctagaatcatcgtccataacatctcgtgaatcctcttgatcttccgcattcaattctctagattcttcaataatcttattcaacaacgattgttc 35841281  T
Q  134 caattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttc 233  Q
    |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  35841282 caattcattctttcttcgaatcaaatcatcgtcgaaatcgcaatcctcaatgagaattctacgaatagcgctactatccaaatcctcaaaaacaccgttc 35841381  T
Q  234 tcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaata 333  Q
    || || || |||||||| ||||||||||  ||||||| |||||||||||||||   ||||  |||||||||||||||||||||  |||||||||||||||    
T  35841382 tcatactccactctgtaaaaaccgatttcataactcataacttttccgatttg---aacggtttctgaaaactctttcaaaacacatcgtccaatcaata 35841478  T
Q  334 caataggcttcttcaattcaacggttacagtttctttctcttttcttctc 383  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35841479 caatcggcttcttcaattcaacggttacagtttctttcccttttcttctc 35841528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 149 - 387
Target Start/End: Original strand, 13313413 - 13313651
Alignment:
Q  149 tcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctg 248  Q
    |||||||||||||| |||||||| ||||||||  |||||||||||||| ||| || |||||||||| | ||||||| ||| ||||||  | |||||||||    
T  13313413 tcgaatcaaatcatagtcaaaattgcaatccttgatgagaattctacggataacaatactatccaatttctcaaaaacactgttctcaaactcgactctg 13313512  T
Q  249 tataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttca 348  Q
    |||||||||||||| | ||||| ||||||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  13313513 tataaaccgattttatgactcacaacttttccaatttgaacaacgaattctgaaaactctttcaaaacgtatcgtccaatcaatacaatcggcttattca 13313612  T
Q  349 attcaacggttacagtttctttctcttttcttctctgct 387  Q
     |||||||||| |||||||||||||||||||||||||||    
T  13313613 tttcaacggttccagtttctttctcttttcttctctgct 13313651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 123 - 382
Target Start/End: Complemental strand, 13314307 - 13314048
Alignment:
Q  123 aacgattgatccaattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaa 222  Q
    ||||||||||||||||||||||| |||||||| ||||| |  ||||||| ||||||||| ||||||||| || ||||| || |||||||||| |||||||    
T  13314307 aacgattgatccaattcattctttcgtcgaattaaatcttaatcaaaattgcaatcctcgatgagaattataggaataacattactatccaattcctcaa 13314208  T
Q  223 aatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcg 322  Q
    || || | |||||  | ||||||||||||||||| ||||| ||| ||||||||||| |||||||  |||||| || |||||||||||||||||  |||||    
T  13314207 aaacatcattctcaaactcgactctgtataaaccaattttataaatcaaaactttttcgatttggacaacgctttttgaaaactctttcaaaatctatcg 13314108  T
Q  323 tccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttct 382  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  13314107 tccaatcaacacaatcggcttcttcatttcaacggttacagtttctttctcttttcttct 13314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 13300924 - 13301051
Alignment:
Q  209 atccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactct 308  Q
    |||||| ||||||||| ||||||||||  | |||||| |||||||| ||||||||||||||| |||||||| ||||||| ||| || |||| ||||||||    
T  13300924 atccaattcctcaaaaacaccgttctcaaactcgactttgtataaatcgattttgtaactcataacttttctgatttgaacaatgctttct-aaaactct 13301022  T
Q  309 ttcaaaacgtatcgtccaatcaatacaat 337  Q
    |||||||||||||||||||||||||||||    
T  13301023 ttcaaaacgtatcgtccaatcaatacaat 13301051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 13305675 - 13305578
Alignment:
Q  245 tctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggct 342  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  13305675 tctgtgtaaaccgattttataactcacaacttttctgatttgaacaacgctttctgaaaactctttcaaaacatatcggccaatcaatacaatcggct 13305578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 13305377 - 13305536
Alignment:
Q  168 aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaac 267  Q
    |||| |||||||||  |||||||||||||||||||||||||||| |  ||||||||| ||||||||||  | ||  ||||| ||||||| ||||| ||||    
T  13305377 aaattgcaatcctc--tgagaattctacgaatagcactactatcaatttcctcaaaaacaccgttctcaaactc--ctctgcataaaccaattttataac 13305472  T
Q  268 tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaat 337  Q
    ||| || |||||||||||||      | |||||||||||||||||||||  ||||||||| |||||||||    
T  13305473 tcataatttttccgatttga------ctttctgaaaactctttcaaaacacatcgtccaaccaatacaat 13305536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 13305739 - 13305673
Alignment:
Q  168 aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttct 234  Q
    |||| ||||| ||| |||| ||||  ||||||| ||||||||||||| ||||||||| |||||||||    
T  13305739 aaattgcaatactcgatgataatttgacgaataacactactatccaattcctcaaaaacaccgttct 13305673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 154 times since January 2019
Visitors: 6695