View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_1 (Length: 615)
Name: NF0905_low_1
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 186 - 613
Target Start/End: Complemental strand, 14044663 - 14044238
Alignment:
| Q |
186 |
acttaacacaacatgtaagaatctatcgttaatgtagaatttgttttgcactctgtttagaaagaatggcaataatatctttagggagggagttagtact |
285 |
Q |
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| T |
14044663 |
acttaacacaacatgtaagaatctatcgttaatgtagaattt----tgcactctgtttagaaagaatggcaataatatctttagggagggagttagtact |
14044568 |
T |
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| Q |
286 |
ttgcattttttcacactctgttagtagaagattaggaactcattcattgcagatttcatggaaaaatatatcatagtgtaacttccaattgcataaaacc |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |||||| |
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| T |
14044567 |
ttgcattttttcacactctgttagtagaagattaggaactcattcattgcagatttcatggaaaaatatatcataatataacttcctattgcacaaaacc |
14044468 |
T |
|
| Q |
386 |
aaagagaattgctctacggtccatctgttttgctcaaaagtttatcaatttat--cagtgtaactcccgattggtaaaaatatgcttttcttccatttta |
483 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
14044467 |
aaagagaattgctctacggtccatcagttttgctcaaaagtttatcaatttatgagagtgtaacttccgattgcaaaaaatatgcttttcttccatttta |
14044368 |
T |
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| Q |
484 |
tcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactgtttgcggtggcgc |
583 |
Q |
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| T |
14044367 |
tcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgc |
14044268 |
T |
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| Q |
584 |
caccgcctccatctgtttcatatcagtcga |
613 |
Q |
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| T |
14044267 |
cgtagcctccgtctgtttcgtatctgtcga |
14044238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 380 - 613
Target Start/End: Complemental strand, 13930293 - 13930059
Alignment:
| Q |
380 |
aaaaccaaagagaattgctctacggtccatctgttttgctcaaaagtttatcaatttatca--gtgtaactcccgattggtaaaaatatgcttttcttcc |
477 |
Q |
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| T |
13930293 |
aaaaccaaagagaattgctctacggtccatcagttttgctcaaaagtttatccatttatcatagtgtaacttccgattgcaaaaaatatgcttttcttcc |
13930194 |
T |
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| Q |
478 |
attttatcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactgtttgcgg |
577 |
Q |
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| T |
13930193 |
attttatcatatctctcaattgacttatttcaaaatctgcttaatttagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tg |
13930095 |
T |
|
| Q |
578 |
tggcgccaccgcctccatctgtttcatatcagtcga |
613 |
Q |
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| T |
13930094 |
tggcgccgccgcctccgtctgtttcgtatctgtcga |
13930059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 13930482 - 13930409
Alignment:
| Q |
170 |
tatacatgagagtaaaacttaacacaacatgtaagaatctatcgttaatgtagaatttgttttgcactctgttt |
243 |
Q |
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| T |
13930482 |
tatacatgagagtaaaacttaacacaacatgtaagaacctatcgttaatgtagaatttgttttgcactctgttt |
13930409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
283 |
actttgcattttttcacactctgttagtagaagattaggaactcattcattgcagatt |
340 |
Q |
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||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||| |
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| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 13476233 - 13476285
Alignment:
| Q |
107 |
gtaatacatttttatcttcttccgtgatacatcttcaaagttcacagtcatct |
159 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||| | || ||||||| |
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| T |
13476233 |
gtaatacatttttatctttttccgtggtacatcttcaaagattactgtcatct |
13476285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 13476292 - 13476332
Alignment:
| Q |
201 |
taagaatctatcgttaatgtagaatttgttttgcactctgt |
241 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||| |
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| T |
13476292 |
taagaatctatcgttaatgtagaattggtttcgcactctgt |
13476332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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