View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_13 (Length: 420)
Name: NF0905_low_13
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 81 - 407
Target Start/End: Complemental strand, 5969469 - 5969143
Alignment:
| Q |
81 |
ataagttggttgggtggcacaccttcaattcattacgatatactggaaggcatgcagtttacattgatgaccgggcacctgtgttgccgacaaaatttga |
180 |
Q |
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| T |
5969469 |
ataagttggttgggtggcacaccttcaattcattacgatatactggaaggcatgcagtttacattgatgaccgggcacctgtgttgccgacaaaatttga |
5969370 |
T |
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| Q |
181 |
atggtctgggtttgtgttgaattccagattactgtggaaggatgttgacgataagccagaatggattaaggatcttaatgcattggatggggatggtgag |
280 |
Q |
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| T |
5969369 |
atggtctgggtttgtgttgaattcccgattactgtggaaggatgttgacgataagccagaatggattaaggatcttgatgcattggatggggatggtgag |
5969270 |
T |
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| Q |
281 |
aagatagagagtccactatctttgctcaagagtacctctgtggtagaaccactagggagttgtggacgtcatgttttgctttggtggttgcgggttgaag |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5969269 |
aagatagagagtccactatctttgctcaagagtacctctgtggtagaaccactagggagttgtggacgtcatgttttgctttggtggttgcgggttgaag |
5969170 |
T |
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| Q |
381 |
ctcgcacagacagcaaattccctgctc |
407 |
Q |
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| T |
5969169 |
ctcgcacagacagcaaattccctgctc |
5969143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 133 - 402
Target Start/End: Original strand, 39272757 - 39273026
Alignment:
| Q |
133 |
tgcagtttacattgatgaccgggcacctgtgttgccgacaaaatttgaatggtctgggtttgtgttgaattccagattactgtggaaggatgttgacgat |
232 |
Q |
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| T |
39272757 |
tgcagtttacataggtgacagggcacctgtgctacctaggaagcttgaatggtctgggtttgtgttgaactccaggttggtttggaaggatcttgatgat |
39272856 |
T |
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| Q |
233 |
aagccagaatggattaaggatcttaatgcattggatggggatggtgagaagatagagagtccactatctttgctcaagagtacctctgtggtagaaccac |
332 |
Q |
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|| ||||| |||||||||||| ||||||| || ||||| | || ||| | || || |||||||| ||| |||| || | ||||||| ||||||||| |
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| T |
39272857 |
aaaccagactggattaaggatattaatgcgttcgatggagttgatgaagatatcgatagtccactgtctctgctgaaagacatctctgtgttagaaccac |
39272956 |
T |
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| Q |
333 |
tagggagttgtggacgtcatgttttgctttggtggttgcgggttgaagctcgcacagacagcaaattccc |
402 |
Q |
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| T |
39272957 |
ttgggagttgtggacgccaagttttgctttggtggctgcgggttgaagctcgcacagacagcaaattccc |
39273026 |
T |
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