View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_14 (Length: 395)
Name: NF0905_low_14
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 385
Target Start/End: Original strand, 35850794 - 35851150
Alignment:
| Q |
29 |
acaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcatctcactcgattcttcaataatcttattcaacaacgat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35850794 |
acaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgat |
35850893 |
T |
|
| Q |
129 |
tgatccaattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcac |
228 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850894 |
tgatccaattcattcttccgtcgaatcaaatcgtcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcac |
35850993 |
T |
|
| Q |
229 |
cgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaat |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850994 |
cgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaat |
35851093 |
T |
|
| Q |
329 |
caatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctg |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851094 |
caatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctg |
35851150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 34 - 383
Target Start/End: Original strand, 35841182 - 35841528
Alignment:
| Q |
34 |
aatccctagaatcatcgtccatcacatcttgtgattcctcttgatcttccacattcatctcactcgattcttcaataatcttattcaacaacgattgatc |
133 |
Q |
| |
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|||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||| || |
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| T |
35841182 |
aatccctagaatcatcgtccataacatctcgtgaatcctcttgatcttccgcattcaattctctagattcttcaataatcttattcaacaacgattgttc |
35841281 |
T |
|
| Q |
134 |
caattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttc |
233 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
35841282 |
caattcattctttcttcgaatcaaatcatcgtcgaaatcgcaatcctcaatgagaattctacgaatagcgctactatccaaatcctcaaaaacaccgttc |
35841381 |
T |
|
| Q |
234 |
tcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaata |
333 |
Q |
| |
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|| || || |||||||| |||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
35841382 |
tcatactccactctgtaaaaaccgatttcataactcataacttttccgatttg---aacggtttctgaaaactctttcaaaacacatcgtccaatcaata |
35841478 |
T |
|
| Q |
334 |
caataggcttcttcaattcaacggttacagtttctttctcttttcttctc |
383 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35841479 |
caatcggcttcttcaattcaacggttacagtttctttcccttttcttctc |
35841528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 149 - 387
Target Start/End: Original strand, 13313413 - 13313651
Alignment:
| Q |
149 |
tcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctg |
248 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||| ||| || |||||||||| | ||||||| ||| |||||| | ||||||||| |
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| T |
13313413 |
tcgaatcaaatcatagtcaaaattgcaatccttgatgagaattctacggataacaatactatccaatttctcaaaaacactgttctcaaactcgactctg |
13313512 |
T |
|
| Q |
249 |
tataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttca |
348 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
13313513 |
tataaaccgattttatgactcacaacttttccaatttgaacaacgaattctgaaaactctttcaaaacgtatcgtccaatcaatacaatcggcttattca |
13313612 |
T |
|
| Q |
349 |
attcaacggttacagtttctttctcttttcttctctgct |
387 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
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| T |
13313613 |
tttcaacggttccagtttctttctcttttcttctctgct |
13313651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 123 - 382
Target Start/End: Complemental strand, 13314307 - 13314048
Alignment:
| Q |
123 |
aacgattgatccaattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaa |
222 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| | ||||||| ||||||||| ||||||||| || ||||| || |||||||||| ||||||| |
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|
| T |
13314307 |
aacgattgatccaattcattctttcgtcgaattaaatcttaatcaaaattgcaatcctcgatgagaattataggaataacattactatccaattcctcaa |
13314208 |
T |
|
| Q |
223 |
aatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcg |
322 |
Q |
| |
|
|| || | ||||| | ||||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| |
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|
| T |
13314207 |
aaacatcattctcaaactcgactctgtataaaccaattttataaatcaaaactttttcgatttggacaacgctttttgaaaactctttcaaaatctatcg |
13314108 |
T |
|
| Q |
323 |
tccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttct |
382 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13314107 |
tccaatcaacacaatcggcttcttcatttcaacggttacagtttctttctcttttcttct |
13314048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 13300924 - 13301051
Alignment:
| Q |
209 |
atccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactct |
308 |
Q |
| |
|
|||||| ||||||||| |||||||||| | |||||| |||||||| ||||||||||||||| |||||||| ||||||| ||| || |||| |||||||| |
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|
| T |
13300924 |
atccaattcctcaaaaacaccgttctcaaactcgactttgtataaatcgattttgtaactcataacttttctgatttgaacaatgctttct-aaaactct |
13301022 |
T |
|
| Q |
309 |
ttcaaaacgtatcgtccaatcaatacaat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
13301023 |
ttcaaaacgtatcgtccaatcaatacaat |
13301051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 13305675 - 13305578
Alignment:
| Q |
245 |
tctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggct |
342 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |
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|
| T |
13305675 |
tctgtgtaaaccgattttataactcacaacttttctgatttgaacaacgctttctgaaaactctttcaaaacatatcggccaatcaatacaatcggct |
13305578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 13305377 - 13305536
Alignment:
| Q |
168 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaac |
267 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| | || ||||| ||||||| ||||| |||| |
|
|
| T |
13305377 |
aaattgcaatcctc--tgagaattctacgaatagcactactatcaatttcctcaaaaacaccgttctcaaactc--ctctgcataaaccaattttataac |
13305472 |
T |
|
| Q |
268 |
tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaat |
337 |
Q |
| |
|
||| || ||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
13305473 |
tcataatttttccgatttga------ctttctgaaaactctttcaaaacacatcgtccaaccaatacaat |
13305536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 13305739 - 13305673
Alignment:
| Q |
168 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttct |
234 |
Q |
| |
|
|||| ||||| ||| |||| |||| ||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
13305739 |
aaattgcaatactcgatgataatttgacgaataacactactatccaattcctcaaaaacaccgttct |
13305673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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