View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_17 (Length: 395)
Name: NF0905_low_17
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 29 - 386
Target Start/End: Complemental strand, 46763306 - 46762949
Alignment:
| Q |
29 |
aaatgataccatcaagaagaacttcaaaaggacatgattcaagaaatggttcacctgttttgctctttttgattgtgcatggttctctctcagagaaact |
128 |
Q |
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| T |
46763306 |
aaatgataccatcaagaagaacttcaaaaggacatgattcaagaaatggttcacctgttttgctctttttgattgtgcatggttctctctcagagaagct |
46763207 |
T |
|
| Q |
129 |
attcctacttccatattcaacctcacctcctaaagaaagaaaacagtaactgagtttatttggatgccaagaaattgtagcaatctaacttattattcaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763206 |
attcctacttccatattcaacctcacctcctaaagaaggaaaacagtaactgagtttatttggatgccaagaaattgtagcaatctaacttattattcaa |
46763107 |
T |
|
| Q |
229 |
caaagataataattgaagaataaattgttgaaattgatcactattaaaaagtgaattttgaagaaaaaacaaagatactaacctccataaacaacagcat |
328 |
Q |
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| T |
46763106 |
caaagataataattgaagaataaattgttgaaattgatcactattaaaaagtgaattttgaagaaaaaacaaagatactaacctccataaacaacagcat |
46763007 |
T |
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| Q |
329 |
ctgcttgaatatcttcacatttgcttttgaaattaaaaaactttctaaccatattctt |
386 |
Q |
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| T |
46763006 |
ctgcttgaatatcttcacatttgcttttgaaattaaaaaactttctaaccattttctt |
46762949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 1083640 - 1083582
Alignment:
| Q |
81 |
acctgttttgctctttttgattgtgcatggttctctctcagagaaactattcctacttc |
139 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||| |||||| |||| |||| |
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| T |
1083640 |
acctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttc |
1083582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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