View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_2 (Length: 557)
Name: NF0905_low_2
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 211 - 557
Target Start/End: Complemental strand, 50389254 - 50388910
Alignment:
| Q |
211 |
aactattacacatgaaagcactcaattgggttcgaccacgaatgatttagacaccataaccaatgtcttgaaattgttttatgcaaccaccacaaatgta |
310 |
Q |
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| T |
50389254 |
aactattacacatgaaagcactcaattgggttcgaccacgaatgatttagac--cataaccaatgtcttgaaattgttttatgcaaccaccacaaatgta |
50389157 |
T |
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| Q |
311 |
gtttcccctatccacaatatccgctacccatgattctttttgacaaaatctattattgtgtttcttccaaatttgtcaaatgcacgctagccaaactact |
410 |
Q |
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| T |
50389156 |
gtttcccctatccacaatatccgctacccatgattctttttgaaaaaatctattattgtgtttcttccaaatttgtcaaatgcacgctagccaaactact |
50389057 |
T |
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| Q |
411 |
tggagcctttccattgatacctttgatgacaaacaaaagccacacaactgtggagcatggtcactagttatatttgataaagcgcatgggatgctcaacc |
510 |
Q |
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| T |
50389056 |
tgaagcctttccattgatacctttgatgataaacaaaagccacacaactgtggagcatggtcactagttatatttgataaagcgcatgggatgctcaacc |
50388957 |
T |
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| Q |
511 |
actttaagattaacttccaaattcatctaaaaataggacactaaaaa |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50388956 |
actttaagattaacttccaaattcatctaaaaataggacattaaaaa |
50388910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 50389378 - 50389328
Alignment:
| Q |
87 |
acatcatcaacctaagatacaaatcaccaaaacctcaattgagaataatcc |
137 |
Q |
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| T |
50389378 |
acatcaacaacctaagatacaaatcaccaaaacctcaattgagaataatcc |
50389328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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