View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_21 (Length: 343)
Name: NF0905_low_21
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 330
Target Start/End: Original strand, 45946009 - 45946321
Alignment:
| Q |
30 |
atttttaactatctgcgttatgcttttataaatttggctaagtgttgcattagaattaaat------------attaaccaatacaaaatgtttttgagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45946009 |
atttttaactatctgcgttatgcttttataaatttggctaagtgttgcattagaattaaatataatctaaaatattaaccaatacaaaatgtttttgagt |
45946108 |
T |
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| Q |
118 |
caaaaaggccgttaaggtaatgatgaagcatataacacattgcaaatcatgtcatagcaggtcatacaaaaggtgtctagtttcatatccataaatattc |
217 |
Q |
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| T |
45946109 |
caaaaaggccgttaaggtaatgatgaagcatataacacattgcaaatcatgtcatagcaggtcatacaaaaggtgtctagtttcatatccataaatattc |
45946208 |
T |
|
| Q |
218 |
tttttatgttcgccatacttctatttataggcgctcctttcatatttaaaagccgaatgccaagggtcataccatccactcgggtttgaatcttttacgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45946209 |
tttttatgttcgccatacttctatttataggcgctcctttcatatttaaaagccgaatgccaagggtcataccatccactcgggtttgaatcttttacgg |
45946308 |
T |
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| Q |
318 |
ccgttgtatggtc |
330 |
Q |
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||||||||||||| |
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| T |
45946309 |
ccgttgtatggtc |
45946321 |
T |
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