View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_22 (Length: 341)
Name: NF0905_low_22
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_22 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 100 - 341
Target Start/End: Complemental strand, 10693760 - 10693519
Alignment:
| Q |
100 |
ctaatatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10693760 |
ctaatatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtga |
10693661 |
T |
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| Q |
200 |
tgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgataaaaccctattttat |
299 |
Q |
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| T |
10693660 |
tgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgataaaaccctattttat |
10693561 |
T |
|
| Q |
300 |
catgccacgtcgaaatattagaaggcggttgcgaccaatctt |
341 |
Q |
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| T |
10693560 |
cgtgccacgtcgaaatattagaaggcggttgcgaccaatctt |
10693519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 10707544 - 10707372
Alignment:
| Q |
112 |
tttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcc |
211 |
Q |
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|||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
10707544 |
tttgccttttggattaagcttatgtttgcaacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggtgttgatgttctttc |
10707445 |
T |
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| Q |
212 |
cacacaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgat |
284 |
Q |
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| T |
10707444 |
cagaaaattgggaaacacttggatactttatcatatatacaatatggttcatttgtcatgtacttgtcatgat |
10707372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 115 - 284
Target Start/End: Complemental strand, 10698332 - 10698163
Alignment:
| Q |
115 |
gccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccac |
214 |
Q |
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||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |
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| T |
10698332 |
gccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccag |
10698233 |
T |
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| Q |
215 |
acaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgat |
284 |
Q |
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| T |
10698232 |
aaaattgtggactatttggatacattacaatatacacattatggttcatttctcatatctttgtcatgat |
10698163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 10657633 - 10657453
Alignment:
| Q |
104 |
tatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgat |
203 |
Q |
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|||||| ||||||||||||||||||||| |||||||| | || |||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||| |
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| T |
10657633 |
tatattgctttgccttttggattaagcttaagtttgctataagacttgataccctcatggaagcgtttggttcactttcaataatttctttggtgttgat |
10657534 |
T |
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| Q |
204 |
gttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgat |
284 |
Q |
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| T |
10657533 |
gttcatcccaaacaaatggggattatttggatacattaccatttacacattatggttcatttgtcatgtacttatcatgat |
10657453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 10690391 - 10690215
Alignment:
| Q |
123 |
gattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattgg |
222 |
Q |
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||||||||| |||||||| || |||||||||||||| |||||||||||||||| |||||| || |||| |||||| ||||||| ||||| | |||||| |
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| T |
10690391 |
gattaagcttaagtttgctacaagggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattgg |
10690292 |
T |
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| Q |
223 |
ggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatgataaaaccctattttat |
299 |
Q |
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||| ||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||| | || ||||||||| |
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| T |
10690291 |
ggattatttggatatattatcatatacacaatatggttcatttttcatgtactaatcatgattagactctattttat |
10690215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 10633980 - 10633863
Alignment:
| Q |
167 |
tgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcattta |
266 |
Q |
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|||||||||| || |||||| |||||||||||||||||||||| || | | ||||||| || |||||||||| |||||||||||| |||||||||| |
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| T |
10633980 |
tgtttggttcgctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattag |
10633881 |
T |
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| Q |
267 |
tcatgtacttgtcatgat |
284 |
Q |
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||||||| |||| ||||| |
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| T |
10633880 |
tcatgtatttgtaatgat |
10633863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 140 - 284
Target Start/End: Original strand, 15240462 - 15240606
Alignment:
| Q |
140 |
caactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacat |
239 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
15240462 |
caacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacat |
15240561 |
T |
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| Q |
240 |
tatcatatacacaatatggttcatttatcatgtacttgtcatgat |
284 |
Q |
| |
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||||||||||||| |||||||||||||| || |||| ||| |||| |
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| T |
15240562 |
tatcatatacacattatggttcatttattatctactagtcttgat |
15240606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 15246802 - 15246907
Alignment:
| Q |
149 |
ttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatata |
248 |
Q |
| |
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|||||||| | | ||||||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||||||||| ||| ||||||||||||||||| |
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| T |
15246802 |
ttgatacccttaaggaagtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacattatcatatg |
15246901 |
T |
|
| Q |
249 |
cacaat |
254 |
Q |
| |
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|||||| |
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| T |
15246902 |
cacaat |
15246907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 33777450 - 33777566
Alignment:
| Q |
149 |
ttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatata |
248 |
Q |
| |
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||||||| |||| |||||||||||||| ||||||||||||||||||||| | |||||| | ||| ||||||||||| ||||| ||||||||||||||| |
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| T |
33777450 |
ttgatacactcatagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatcatata |
33777549 |
T |
|
| Q |
249 |
cacaatatggttcattt |
265 |
Q |
| |
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|||| ||||||||||| |
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| T |
33777550 |
cacagcatggttcattt |
33777566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 33774811 - 33774931
Alignment:
| Q |
149 |
ttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgat----gatgttcttcccacacaattggggaatatgtggatacattatca |
244 |
Q |
| |
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||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||||| ||||| |||||||| | ||| ||||||||||||| |
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| T |
33774811 |
ttgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgatcgatgttcctcccaaacaattggacattatcaggatacattatca |
33774910 |
T |
|
| Q |
245 |
tatacacaatatggttcattt |
265 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
33774911 |
tatacacgatatggttcattt |
33774931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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