View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_23 (Length: 338)
Name: NF0905_low_23
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_23 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 11779048 - 11778955
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaattaacattcacaattcatttcaattatc |
189 |
Q |
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| T |
11779048 |
agatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacctccacacctaaattaacattcacaatttatttcagttatc |
11778955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 11797910 - 11797803
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaa-ttaacattcacaattcatttcaattatcattac |
194 |
Q |
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| T |
11797910 |
agatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcattgc |
11797811 |
T |
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| Q |
195 |
atttagaa |
202 |
Q |
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|||||||| |
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| T |
11797810 |
atttagaa |
11797803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 11675973 - 11675910
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacaccta |
159 |
Q |
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| T |
11675973 |
agatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacaccta |
11675910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 11684252 - 11684189
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacaccta |
159 |
Q |
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| T |
11684252 |
agatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacaccta |
11684189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 11696069 - 11695984
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaat-taacattcacaattcatt |
180 |
Q |
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|||||||||||||| || || | ||| ||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
11696069 |
agatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
11695984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 11701866 - 11701770
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaa-ttaacattcacaattcatttcaattatcat |
191 |
Q |
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| T |
11701866 |
agatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcat |
11701770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 16511 - 16415
Alignment:
| Q |
96 |
agatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaa-ttaacattcacaattcatttcaattatcat |
191 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||| ||||||||| ||| |||||||||| |||| |
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| T |
16511 |
agatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcat |
16415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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