View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0905_low_39 (Length: 290)

Name: NF0905_low_39
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0905_low_39
NF0905_low_39
[»] chr1 (13 HSPs)
chr1 (3-135)||(50749942-50750072)
chr1 (149-232)||(50749613-50749696)
chr1 (29-101)||(32574991-32575063)
chr1 (189-228)||(12635151-12635190)
chr1 (195-228)||(16161821-16161854)
chr1 (195-228)||(34413166-34413199)
chr1 (195-228)||(49626901-49626934)
chr1 (197-233)||(5701269-5701305)
chr1 (197-233)||(7997799-7997835)
chr1 (197-233)||(28035149-28035185)
chr1 (193-233)||(39927589-39927629)
chr1 (197-233)||(40881047-40881083)
chr1 (197-233)||(45426101-45426137)
[»] chr6 (8 HSPs)
chr6 (193-243)||(34489252-34489302)
chr6 (193-228)||(33543660-33543695)
chr6 (195-233)||(26588539-26588577)
chr6 (195-228)||(22571459-22571492)
chr6 (197-233)||(8028153-8028189)
chr6 (197-233)||(8196442-8196478)
chr6 (197-233)||(23947353-23947389)
chr6 (197-233)||(25064242-25064278)
[»] chr8 (7 HSPs)
chr8 (197-233)||(14906958-14906994)
chr8 (190-228)||(28239839-28239877)
chr8 (195-228)||(8443581-8443614)
chr8 (195-228)||(41896499-41896532)
chr8 (197-233)||(9619392-9619428)
chr8 (197-233)||(32724516-32724552)
chr8 (197-233)||(44099969-44100005)
[»] chr5 (11 HSPs)
chr5 (193-233)||(42886482-42886522)
chr5 (195-228)||(1582163-1582196)
chr5 (195-228)||(1602619-1602652)
chr5 (195-228)||(8088283-8088316)
chr5 (195-228)||(10332620-10332653)
chr5 (195-228)||(14211206-14211239)
chr5 (195-228)||(19103543-19103576)
chr5 (195-228)||(28540982-28541015)
chr5 (195-228)||(38111020-38111053)
chr5 (197-233)||(34881726-34881762)
chr5 (197-233)||(41184475-41184511)
[»] chr3 (12 HSPs)
chr3 (197-233)||(21488094-21488130)
chr3 (197-233)||(51202289-51202325)
chr3 (197-228)||(17237808-17237839)
chr3 (193-228)||(36734732-36734767)
chr3 (193-243)||(31794070-31794120)
chr3 (195-228)||(4396406-4396439)
chr3 (195-228)||(7546593-7546626)
chr3 (195-228)||(12947346-12947379)
chr3 (195-228)||(51487089-51487122)
chr3 (197-233)||(25162439-25162475)
chr3 (197-233)||(35499233-35499269)
chr3 (197-233)||(36906125-36906161)
[»] scaffold0146 (1 HSPs)
scaffold0146 (197-228)||(16360-16391)
[»] chr4 (19 HSPs)
chr4 (193-228)||(9645589-9645624)
chr4 (193-228)||(18138953-18138988)
chr4 (193-228)||(35261205-35261240)
chr4 (193-228)||(49126166-49126201)
chr4 (193-243)||(46991155-46991205)
chr4 (195-228)||(18048887-18048920)
chr4 (195-228)||(22300853-22300886)
chr4 (195-228)||(36194709-36194742)
chr4 (195-228)||(47320463-47320496)
chr4 (197-233)||(868180-868216)
chr4 (193-233)||(2624510-2624550)
chr4 (197-233)||(4643876-4643912)
chr4 (197-233)||(8009396-8009432)
chr4 (197-233)||(9283929-9283965)
chr4 (197-233)||(9528912-9528948)
chr4 (197-233)||(25273901-25273937)
chr4 (197-233)||(29965653-29965689)
chr4 (197-233)||(47417680-47417716)
chr4 (197-233)||(53616685-53616721)
[»] chr7 (5 HSPs)
chr7 (190-228)||(6002020-6002058)
chr7 (195-228)||(22742926-22742959)
chr7 (195-228)||(24350913-24350946)
chr7 (195-228)||(28476209-28476242)
chr7 (197-233)||(32684674-32684710)
[»] scaffold0347 (1 HSPs)
scaffold0347 (195-228)||(6014-6047)
[»] scaffold0039 (1 HSPs)
scaffold0039 (195-228)||(93090-93123)
[»] scaffold0003 (1 HSPs)
scaffold0003 (197-234)||(361833-361870)
[»] chr2 (5 HSPs)
chr2 (195-228)||(3308935-3308968)
chr2 (195-228)||(12647993-12648026)
chr2 (197-233)||(27249186-27249222)
chr2 (176-228)||(27477137-27477189)
chr2 (197-233)||(40659967-40660003)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 50750072 - 50749942
Alignment:
Q  3 ttttttaattatgtagagttttttatggtaactcttgcaagaacattgttgttttcagtgttttctttgtcattaaggttatatgttcaataacattata 102  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  50750072 tttttttattatgtagagttttttatggtaactcttgcaagaaaattgttgttttcagtgttttctttgtcattaaggttatatgttcaataacat--ta 50749975  T
Q  103 tgcttatgtttctcatccacatccacgatgact 135  Q
    |||||||||||||||||||||||||||||||||    
T  50749974 tgcttatgtttctcatccacatccacgatgact 50749942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 50749696 - 50749613
Alignment:
Q  149 tttcacatggatctaatttttctctcatgatttcgtcatccggcggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattc 232  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50749696 tttcacatggatataatttttctctcatgatttcgtcatccggcggtgtgttgtatgtcgtcttgtgcggcgttgtttgaattc 50749613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 32575063 - 32574991
Alignment:
Q  29 ggtaactcttgcaagaacattgttgttttcagtgttttctttgtcattaaggttatatgttcaataacattat 101  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32575063 ggtaactcttgcaagaacattgttgttttgagtgttttctttgtcattaaggttatatgttcaataacattat 32574991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 12635151 - 12635190
Alignment:
Q  189 cggcggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  12635151 cggcgttgtgttgttcgtcgtcttgtgcggcgttgtttga 12635190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 16161821 - 16161854
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  16161821 tgtgttgttcgtcgtcttgtgcggcgttgtttga 16161854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 34413199 - 34413166
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  34413199 tgtgttgttcgtcgtcttgtgcggcgttgtttga 34413166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 49626901 - 49626934
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  49626901 tgtgttgttcgtcgtcttgtgcggcgttgtttga 49626934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 5701269 - 5701305
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  5701269 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 5701305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 7997799 - 7997835
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  7997799 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 7997835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 28035149 - 28035185
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  28035149 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 28035185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 39927629 - 39927589
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||||||| ||||||||||| |||||||||||| ||||    
T  39927629 ggtgtgttgttcgtcgtcttgtgtggcgttgtttgatttcc 39927589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 40881083 - 40881047
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  40881083 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 40881047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 45426137 - 45426101
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  45426137 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 45426101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 34489252 - 34489302
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattcctatattgttg 243  Q
    ||||||||||| ||||||||||||| |||||||||| |||| |||||||||    
T  34489252 ggtgtgttgttcgtcgtcttgtgcgacgttgtttgatttcccatattgttg 34489302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 33543695 - 33543660
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33543695 ggtgtgttgttcgtcgtcttgtgcggcgttgtttga 33543660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 26588577 - 26588539
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  26588577 tgtgttgattgtcgtcttgtgcggcgttgtttgatttcc 26588539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 22571459 - 22571492
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  22571459 tgtgttgttcgtcgtcttgtgcggcgttgtttga 22571492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 8028189 - 8028153
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  8028189 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 8028153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 8196478 - 8196442
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  8196478 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 8196442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 23947389 - 23947353
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  23947389 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 23947353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 25064242 - 25064278
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  25064242 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 25064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 14906994 - 14906958
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14906994 tgttgtttgtcgtcttgtgcggcgttgtttgatttcc 14906958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 28239839 - 28239877
Alignment:
Q  190 ggcggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  28239839 ggcggtttgttgttcgtcgtcttgtgcggcgttgtttga 28239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 8443614 - 8443581
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  8443614 tgtgttgttcgtcgtcttgtgcggcgttgtttga 8443581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 41896499 - 41896532
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  41896499 tgtgttgttggtcgtcttgtgcggcgttgtttga 41896532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 9619428 - 9619392
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  9619428 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 9619392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 32724552 - 32724516
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  32724552 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 32724516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 44100005 - 44099969
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  44100005 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 44099969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 42886482 - 42886522
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  42886482 ggtgtgttgttcgtcgtcttgtgcggcgttgtttgatttcc 42886522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 1582196 - 1582163
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||| ||||||||||||||||||||||||||||    
T  1582196 tgtgtcgtttgtcgtcttgtgcggcgttgtttga 1582163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 1602619 - 1602652
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||| ||||||||||||||||||||||||||||    
T  1602619 tgtgtcgtttgtcgtcttgtgcggcgttgtttga 1602652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 8088316 - 8088283
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||||||| |||||||||||||||||||||||    
T  8088316 tgtgttgtttatcgtcttgtgcggcgttgtttga 8088283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 10332653 - 10332620
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||||||||||||||||| ||||||||    
T  10332653 tgtgttgtttgtcgtcttgtgcggcattgtttga 10332620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 14211206 - 14211239
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  14211206 tgtgttgttcgtcgtcttgtgcggcgttgtttga 14211239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 19103576 - 19103543
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  19103576 tgtgttgttagtcgtcttgtgcggcgttgtttga 19103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 28541015 - 28540982
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  28541015 tgtgttgttcgtcgtcttgtgcggcgttgtttga 28540982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 38111053 - 38111020
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||||||||| |||||||||||||||||||||    
T  38111053 tgtgttgtttgttgtcttgtgcggcgttgtttga 38111020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 34881726 - 34881762
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  34881726 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 34881762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 41184511 - 41184475
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  41184511 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 41184475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 21488094 - 21488130
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    |||||||||||||||||||||||||||||||| ||||    
T  21488094 tgttgtttgtcgtcttgtgcggcgttgtttgatttcc 21488130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 51202325 - 51202289
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    |||||||||||||||||||||||||||||||| ||||    
T  51202325 tgttgtttgtcgtcttgtgcggcgttgtttgatttcc 51202289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 17237808 - 17237839
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||||||||||||||||||||||||    
T  17237808 tgttgtttgtcgtcttgtgcggcgttgtttga 17237839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 36734767 - 36734732
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36734767 ggtgtgttgttcgtcgtcttgtgcggcgttgtttga 36734732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 31794070 - 31794120
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattcctatattgttg 243  Q
    ||||||||||| ||||| |||||||||||||||||| || |||| ||||||    
T  31794070 ggtgtgttgttcgtcgttttgtgcggcgttgtttgattttctatcttgttg 31794120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 4396439 - 4396406
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||||||||||||| ||||||||||||    
T  4396439 tgtgttgtttgtcgtcttgtgtggcgttgtttga 4396406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 7546593 - 7546626
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  7546593 tgtgttgttcgtcgtcttgtgcggcgttgtttga 7546626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 12947379 - 12947346
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  12947379 tgtgttgttcgtcgtcttgtgcggcgttgtttga 12947346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 51487089 - 51487122
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  51487089 tgtgttgttcgtcgtcttgtgcggcgttgtttga 51487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 25162439 - 25162475
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  25162439 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 25162475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 35499269 - 35499233
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  35499269 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 35499233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 36906125 - 36906161
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  36906125 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 36906161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 16391 - 16360
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||||||||||||||||||||||||    
T  16391 tgttgtttgtcgtcttgtgcggcgttgtttga 16360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 9645624 - 9645589
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9645624 ggtgtgttgttcgtcgtcttgtgcggcgttgtttga 9645589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 18138988 - 18138953
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18138988 ggtgtgttgttcgtcgtcttgtgcggcgttgtttga 18138953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 35261205 - 35261240
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||||||||||||||||| |||||||||||||||    
T  35261205 ggtgtgttgtttgtcgtcttctgcggcgttgtttga 35261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 49126201 - 49126166
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49126201 ggtgtgttgttcgtcgtcttgtgcggcgttgtttga 49126166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 46991205 - 46991155
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattcctatattgttg 243  Q
    |||||||||||||||||||| || |||||||||||| |||| || ||||||    
T  46991205 ggtgtgttgtttgtcgtcttctgtggcgttgtttgatttcccatcttgttg 46991155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 18048887 - 18048920
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||||||||||||||| ||||||||||||    
T  18048887 tgtgttgtttgtcgtcttgtgtggcgttgtttga 18048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 22300853 - 22300886
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  22300853 tgtgttgttcgtcgtcttgtgcggcgttgtttga 22300886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 36194709 - 36194742
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  36194709 tgtgttgttcgtcgtcttgtgcggcgttgtttga 36194742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 47320496 - 47320463
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  47320496 tgtgttgttcgtcgtcttgtgcggcgttgtttga 47320463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 868180 - 868216
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  868180 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 868216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 2624510 - 2624550
Alignment:
Q  193 ggtgtgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  2624510 ggtgtgttgttcgtcgtcttgtgcggcgtagtttgatttcc 2624550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 4643876 - 4643912
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  4643876 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 4643912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 8009432 - 8009396
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  8009432 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 8009396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 9283929 - 9283965
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  9283929 tgttgtttgtcgtcttgtgtggcgttgtttgatttcc 9283965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 9528948 - 9528912
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  9528948 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 9528912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 25273901 - 25273937
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  25273901 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 25273937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 29965653 - 29965689
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  29965653 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 29965689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 47417680 - 47417716
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  47417680 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 47417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 53616721 - 53616685
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  53616721 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 53616685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 6002020 - 6002058
Alignment:
Q  190 ggcggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  6002020 ggcggtttgttgttcgtcgtcttgtgcggcgttgtttga 6002058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 22742926 - 22742959
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  22742926 tgtgttgttcgtcgtcttgtgcggcgttgtttga 22742959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 24350946 - 24350913
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  24350946 tgtgttgttcgtcgtcttgtgcggcgttgtttga 24350913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 28476209 - 28476242
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  28476209 tgtgttgttcgtcgtcttgtgcggcgttgtttga 28476242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 32684674 - 32684710
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  32684674 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 32684710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 6014 - 6047
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  6014 tgtgttgttcgtcgtcttgtgcggcgttgtttga 6047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 93090 - 93123
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||||||||| |||||||||||||||||||||    
T  93090 tgtgttgtttgttgtcttgtgcggcgttgtttga 93123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 361870 - 361833
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcct 234  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  361870 tgttgttcgtcgtcttgtgcggcgttgtttgatttcct 361833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 3308935 - 3308968
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    |||||| |||||||||||||||||||||||||||    
T  3308935 tgtgttatttgtcgtcttgtgcggcgttgtttga 3308968  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 12648026 - 12647993
Alignment:
Q  195 tgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  12648026 tgtgttgttcgtcgtcttgtgcggcgttgtttga 12647993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 27249222 - 27249186
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  27249222 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 27249186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 27477137 - 27477189
Alignment:
Q  176 tgatttcgtcatccggcggtgtgttgtttgtcgtcttgtgcggcgttgtttga 228  Q
    ||||||| ||||| || ||| |||||||||| ||||||||||||| |||||||    
T  27477137 tgatttcatcatctggtggtttgttgtttgtagtcttgtgcggcgctgtttga 27477189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 40660003 - 40659967
Alignment:
Q  197 tgttgtttgtcgtcttgtgcggcgttgtttgaattcc 233  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  40660003 tgttgttcgtcgtcttgtgcggcgttgtttgatttcc 40659967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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