View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0905_low_4 (Length: 540)

Name: NF0905_low_4
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0905_low_4
NF0905_low_4
[»] chr1 (4 HSPs)
chr1 (293-467)||(41430098-41430271)
chr1 (165-240)||(41429843-41429918)
chr1 (7-72)||(41429678-41429743)
chr1 (238-292)||(41430016-41430070)
[»] scaffold0274 (4 HSPs)
scaffold0274 (293-467)||(14612-14784)
scaffold0274 (165-240)||(14965-15044)
scaffold0274 (238-294)||(14810-14866)
scaffold0274 (7-72)||(15146-15211)
[»] chr2 (3 HSPs)
chr2 (293-427)||(33367940-33368077)
chr2 (293-427)||(33360419-33360553)
chr2 (380-439)||(33368111-33368171)
[»] chr7 (1 HSPs)
chr7 (328-389)||(7764913-7764974)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 293 - 467
Target Start/End: Original strand, 41430098 - 41430271
Alignment:
Q  293 tgttccttttctcttgtgggggtgtcttcaatctatttaaatttttgatttttattaaaatcttaatcatgggtttcacttttcaatcatgatcattatg 392  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41430098 tgttccttttctcttgtgggg-tgtcttcaatctatttaaattttttatttttattaaaatcttaatcatgggtttcacttttcaatcatgatcattatg 41430196  T
Q  393 tatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactactcctttgttt 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41430197 tatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactgctcctttgttt 41430271  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 41429843 - 41429918
Alignment:
Q  165 tattattactgttttagtcacttttggtgtgtgccttacaccacgaacaaaaccttcaaacttttcacactcacta 240  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41429843 tattattattgttttagtcacttttggtgtgtgccttacaccacgaacaaaaccttcaaacttttcacactaacta 41429918  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 41429678 - 41429743
Alignment:
Q  7 cttataacaaatggattatttctaatgaattttgttcttgaatgatctcaaggataattcccaatg 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41429678 cttataacaaatggattatttctaatgaattttgttcttgaatgatctcaaggataattcctaatg 41429743  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 41430016 - 41430070
Alignment:
Q  238 ctagactcaaaaagcagaagaaacaggtttctatctattcattctccaattcata 292  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41430016 ctaggctcaaaaagcagaagaaacaggtttctatctattcattctccaattcata 41430070  T

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Target: scaffold0274 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 293 - 467
Target Start/End: Complemental strand, 14784 - 14612
Alignment:
Q  293 tgttccttttctcttgtgggggtgtcttcaatctatttaaatttttgatttttattaaaatcttaatcatgggtttcacttttcaatcatgatcattatg 392  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14784 tgttccttttctcttgtgggg-tgtcttcaatctatttaaattttttatttttattaaaatcttaatcatgggtttcactttt-aatcatgatcattatg 14687  T
Q  393 tatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactactcctttgttt 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14686 tatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactgctcctttgttt 14612  T

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Target: scaffold0274; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 15044 - 14965
Alignment:
Q  165 tattattactgttttagtcacttttggtgtgtgccttaca----ccacgaacaaaaccttcaaacttttcacactcacta 240  Q
    |||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  15044 tattattattgttttagtcacttttggtgtgtgccttacagacaccacgaacaaaaccttcaaacttttcacactcacta 14965  T

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Target: scaffold0274; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 14866 - 14810
Alignment:
Q  238 ctagactcaaaaagcagaagaaacaggtttctatctattcattctccaattcatatg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14866 ctagactcaaaaagcagaagaaacaggtttctatctattcattctccaattcatatg 14810  T

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Target: scaffold0274; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 15211 - 15146
Alignment:
Q  7 cttataacaaatggattatttctaatgaattttgttcttgaatgatctcaaggataattcccaatg 72  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  15211 cttataacaaatggattatttctaatgaattttgttctcgattgatctcaaggataattcctaatg 15146  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 293 - 427
Target Start/End: Original strand, 33367940 - 33368077
Alignment:
Q  293 tgttccttttctcttgtgggggtgtcttcaatctatttaaatttttgatttttattaaaatcttaatcatggg--tttcacttttcaatcatgatcatta 390  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  33367940 tgttctttttctcttgtgggg-tgtcttcaatctattcaaagttttgatttttattaaaatcttaatcatggggttttcacttttcaatcatgatcatta 33368038  T
Q  391 tgtatgcctctga--ttttccagtttctgatttaaagtt 427  Q
    |||||||||||||  ||||||| |||||| |||||||||    
T  33368039 tgtatgcctctgattttttccaatttctgctttaaagtt 33368077  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 293 - 427
Target Start/End: Original strand, 33360419 - 33360553
Alignment:
Q  293 tgttccttttctcttgtgggggtgtcttcaatctatttaaatttttgatttttattaaaatcttaatcatgggtttcacttttcaatcatgatcattatg 392  Q
    ||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| | ||||||  || ||||||||||||| ||||||||||||     
T  33360419 tgttccttttctctttttggggtgtcttcaatctattcaaagttttgatttttattaaatttttaatctgggttttcacttttcaaccatgatcattatt 33360518  T
Q  393 tatgcctctgattttccagtttctgatttaaagtt 427  Q
    |||||||||  ||||||| |||||| |||||||||    
T  33360519 tatgcctctacttttccaatttctgctttaaagtt 33360553  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 33368111 - 33368171
Alignment:
Q  380 catgatcattatgtatg-cctctgattttccagtttctgatttaaagttattaattttgct 439  Q
    |||||||||||| |||| || |||||||||||||||||| |||||||||||||| ||||||    
T  33368111 catgatcattatttatgtcccctgattttccagtttctgctttaaagttattaactttgct 33368171  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 7764974 - 7764913
Alignment:
Q  328 tttaaatttttgatttttattaaaatcttaatcatgggtttcacttttcaatcatgatcatt 389  Q
    |||||| ||||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||    
T  7764974 tttaaagttttgatttttataaaaatcttaaacatggttttcacttttcaaccatgatcatt 7764913  T

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