View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_40 (Length: 288)
Name: NF0905_low_40
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 4402939 - 4403035
Alignment:
| Q |
122 |
tcatcagttattcatttctagaaatgttattttctatgagctgcattttccttttcataatttttcgtcatcttctacatcaagttcacctttacct |
218 |
Q |
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| T |
4402939 |
tcatcagttattcatttctagaaataatattttctatgagctgcattttccttttcatgtttcttcgtcatcttctacatcaagttcacctttacct |
4403035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 6096459 - 6096591
Alignment:
| Q |
47 |
tcatagggctagaaaggctgtttttctcggttacaaagagggagtcagaggatatattctctatgagttactttctcatcagttattcatttctagaaat |
146 |
Q |
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| T |
6096459 |
tcatagagctagaaaaacagtttttcttggttataaagagggtgtaaagggctatattttgtatgatttgcattctcatcaaatgattatttctaggaat |
6096558 |
T |
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| Q |
147 |
gttattttctatgagctgcattttccttttcat |
179 |
Q |
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| T |
6096559 |
gttattttctttgaggatcattttccttttcat |
6096591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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