View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_41 (Length: 287)
Name: NF0905_low_41
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 274
Target Start/End: Original strand, 16867911 - 16868152
Alignment:
| Q |
33 |
gttacttatgagatgaacatgtaccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgc |
132 |
Q |
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| T |
16867911 |
gttacttatgagatgaacacgtaccacattgtccttggttcttcacaggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgc |
16868010 |
T |
|
| Q |
133 |
attttcatacttaaaagtacttgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggca |
232 |
Q |
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| T |
16868011 |
attttcatacttaaaagtacttgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggca |
16868110 |
T |
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| Q |
233 |
aattgattaatgcctagtgtgtatagcttgttattgtcacct |
274 |
Q |
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| T |
16868111 |
aattgattaacgcctagtgtgtatagcttgttattgtcacct |
16868152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 30720123 - 30720334
Alignment:
| Q |
54 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
153 |
Q |
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| T |
30720123 |
taccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtact |
30720219 |
T |
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| Q |
154 |
tgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaatgcctagtgtg |
253 |
Q |
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| T |
30720220 |
tgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgcctaatttg |
30720319 |
T |
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| Q |
254 |
tatagcttgttattg |
268 |
Q |
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| T |
30720320 |
tataacttgttattg |
30720334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 30881236 - 30881025
Alignment:
| Q |
54 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
153 |
Q |
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| T |
30881236 |
taccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtact |
30881140 |
T |
|
| Q |
154 |
tgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaatgcctagtgtg |
253 |
Q |
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| T |
30881139 |
tgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgcctaatttg |
30881040 |
T |
|
| Q |
254 |
tatagcttgttattg |
268 |
Q |
| |
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|||| |||||||||| |
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| T |
30881039 |
tataacttgttattg |
30881025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 44731558 - 44731772
Alignment:
| Q |
54 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
153 |
Q |
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| T |
44731558 |
taccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagt |
44731657 |
T |
|
| Q |
154 |
tgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaatgcctagtgtg |
253 |
Q |
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| T |
44731658 |
tgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgcctaacttg |
44731757 |
T |
|
| Q |
254 |
tatagcttgttattg |
268 |
Q |
| |
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||||||||||||||| |
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| T |
44731758 |
tatagcttgttattg |
44731772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 30892319 - 30892108
Alignment:
| Q |
54 |
taccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
153 |
Q |
| |
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| T |
30892319 |
taccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtact |
30892223 |
T |
|
| Q |
154 |
tgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaatgcctagtgtg |
253 |
Q |
| |
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|||| |||||||||| ||||||||||| || ||||| ||||||||||| | | ||||||| |||||||||| ||| ||||||||||||||||||| | || |
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| T |
30892222 |
tgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgatgtctgcaaattgattaatgcctaatttg |
30892123 |
T |
|
| Q |
254 |
tatagcttgttattg |
268 |
Q |
| |
|
|||| |||||||||| |
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| T |
30892122 |
tataacttgttattg |
30892108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 8898858 - 8898638
Alignment:
| Q |
53 |
gtaccacattgtccttggttcttcacaggtgtaacggctcctttcttcgtccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtac |
152 |
Q |
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|
||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||| | ||||| ||||||||| |||||||||||||||||||| |
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| T |
8898858 |
gtaccacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtag |
8898759 |
T |
|
| Q |
153 |
ttgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaatgcctagtgt |
252 |
Q |
| |
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|||||||| ||||||| ||||||||||| |||||||| ||||| ||||| | | ||||| || ||||||||||| ||||||||||||||||||||| | |
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| T |
8898758 |
ttgtccttatgattgatgagcacatatgtcccttgaatttgttcctagatgctacaaactcctcattggtgaggtctgcaaattgattaatgcctagttt |
8898659 |
T |
|
| Q |
253 |
gtatagcttgttattgtcacc |
273 |
Q |
| |
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|||| | |||||||||||| |
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|
| T |
8898658 |
gtatgattcgttattgtcacc |
8898638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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