View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_43 (Length: 285)
Name: NF0905_low_43
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 24142898 - 24142670
Alignment:
| Q |
11 |
cacagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacc |
110 |
Q |
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| T |
24142898 |
cacagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctaaatgacgtgtttgtgctcacc |
24142799 |
T |
|
| Q |
111 |
caataccatcttcatgtggtaagattctacatttttaacttttttgtacta--nnnnnnnnnnatgtaatctgaaggctatgtttatttttatttgtgta |
208 |
Q |
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| T |
24142798 |
caataccatcttcatgtggtaagattctacatttttaacttttttgtactattttttttttttatgtaagctgaaggctatgtttatttttatttgtgta |
24142699 |
T |
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| Q |
209 |
aactaaagtgaatcgtatcatgatattaa |
237 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
24142698 |
aactaacgtgaatcgtatcatgatattaa |
24142670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 16362888 - 16362953
Alignment:
| Q |
172 |
atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa |
237 |
Q |
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| T |
16362888 |
atgtaaactgaatgctatgattatttttatttatgtaaactgaattgaatcatatcatgatattaa |
16362953 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 9030704 - 9030758
Alignment:
| Q |
172 |
atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtat |
226 |
Q |
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| T |
9030704 |
atgtaagctgaaggctatgtttatttttatttttgtaaactggattgaatcgtat |
9030758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 1771775 - 1771830
Alignment:
| Q |
182 |
aaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa |
237 |
Q |
| |
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||||||||||||| |||||| | |||||||||| |||||||| |||||||||||| |
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| T |
1771775 |
aaggctatgtttaattttatataagtaaactaaactgaatcgtgtcatgatattaa |
1771830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 9030477 - 9030564
Alignment:
| Q |
42 |
gaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtgg |
129 |
Q |
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| T |
9030477 |
gaggtggaggtggagccacaaccgctaaatgaatatcttgatggcgcacgtgacttgtctgtgctcacccaataccatcttcatgtgg |
9030564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 9030630 - 9030680
Alignment:
| Q |
172 |
atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatc |
222 |
Q |
| |
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| T |
9030630 |
atgtaaactgaaggttatgtttatttttatttatgtaaactgaattgaatc |
9030680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 42229445 - 42229494
Alignment:
| Q |
187 |
tatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatatta |
236 |
Q |
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| T |
42229445 |
tatgtttatttttatttatgtaaacttaactgaatcgtatcatgctatta |
42229494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 5979492 - 5979524
Alignment:
| Q |
180 |
tgaaggctatgtttatttttatttgtgtaaact |
212 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
5979492 |
tgaaggctatgtttatttttatttatgtaaact |
5979524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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