View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0905_low_50 (Length: 269)
Name: NF0905_low_50
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_50 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 24142997 - 24142750
Alignment:
| Q |
22 |
gggcaggggaaggggccgccttgctgaccctgcgcctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggaggtggagaac |
121 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142997 |
gggcatgggcaggggccgccttgctgaccctgcgcctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggaggtggagaac |
24142898 |
T |
|
| Q |
122 |
acagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcaccc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24142897 |
acagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctaaatgacgtgtttgtgctcaccc |
24142798 |
T |
|
| Q |
222 |
aataccatcttcatgtggtaagattctacatttttaacttttttgtac |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142797 |
aataccatcttcatgtggtaagattctacatttttaacttttttgtac |
24142750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 40974721 - 40974774
Alignment:
| Q |
60 |
aggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggagg |
113 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
40974721 |
aggtgaacgagcctgagccccagcccgagaagtaccatatggaggaggaggagg |
40974774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 1771499 - 1771586
Alignment:
| Q |
26 |
aggggaaggggccgccttgctgaccctgcgcctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggagg |
113 |
Q |
| |
|
|||||||||| ||||| | |||| ||| |||||||||| ||||||||||| | ||||||||| | | |||||||||||||||||| |
|
|
| T |
1771499 |
aggggaagggaccgccgttctgagtctgagcctaaggtgtacgagcctgagccccagcccgagcaatattatatggaggaggaggagg |
1771586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 9030477 - 9030564
Alignment:
| Q |
152 |
gaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtgg |
239 |
Q |
| |
|
||||||||||||||||| |||| ||| |||| |||| || |||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
9030477 |
gaggtggaggtggagccacaaccgctaaatgaatatcttgatggcgcacgtgacttgtctgtgctcacccaataccatcttcatgtgg |
9030564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 712 times since January 2019
Visitors: 6696