View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_59 (Length: 223)
Name: NF0905_low_59
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_59 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27046889 - 27046668
Alignment:
| Q |
1 |
ttatggcgtatcagaaagaatccctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046889 |
ttatggcgtatcagaaagaacccctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctac |
27046790 |
T |
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| Q |
101 |
acttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27046789 |
acttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcga-cccttgtca |
27046691 |
T |
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| Q |
201 |
tgtattcaaagaagcactctcaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
27046690 |
tgtattcaaagaagcactctcaa |
27046668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 27087013 - 27086793
Alignment:
| Q |
2 |
tatggcgtatcagaaagaatccctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctaca |
101 |
Q |
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| T |
27087013 |
tatggcggatcagaaagcacccctaaagctagaaatgaaagatgttgtgcttgtaaaatcatccaagtccattccttcttgtattctttctctgtctaca |
27086914 |
T |
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| Q |
102 |
cttgacaataaagacaacaattataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcat |
201 |
Q |
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| T |
27086913 |
cttgacaatatatacatcaataatagcctttttctatttgttcatgtataccggtcatcaacaattcatgattctgattcgggtttcga-cccttgtcat |
27086815 |
T |
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| Q |
202 |
gtattcaaagaagcactctcaa |
223 |
Q |
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| T |
27086814 |
gtattcaaagaagcgctctcaa |
27086793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 27042844 - 27042645
Alignment:
| Q |
23 |
cctaaacctagaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaat |
122 |
Q |
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|||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||| ||| |
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| T |
27042844 |
cctaaagctagaaatgaaagatattgtacttgtaaaaccatccaagtccattccttcttgtattctctctttgtctacacttgacaatatatacataaat |
27042745 |
T |
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| Q |
123 |
tataacctttgtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctca |
222 |
Q |
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| T |
27042744 |
aataatctttgtcattttgttcatgtataccggtcatcaacaatacatgattctgattcaggtttcca-ccctagtcatgtattcaaagaagcgctctca |
27042646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 27100468 - 27100279
Alignment:
| Q |
33 |
gaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataaccttt |
132 |
Q |
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||||||||||||||||||||| |||||||||| || || ||||||||||||||||||||||| || ||| ||||||||| ||| | | || |||||||| |
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| T |
27100468 |
gaaatgaaagatgttgtgcttataaaaccatcaaaatcaattccttcttgtattctttctctttccacaattgacaatagagaaatctataataaccttg |
27100369 |
T |
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| Q |
133 |
gtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaa |
223 |
Q |
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| T |
27100368 |
ctcaaactgttcatatatatcgatcaccatcaattaatgattctgatttgagtttc-aacttttgtcatgtatttaaagaagcactctcaa |
27100279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 27106975 - 27106786
Alignment:
| Q |
33 |
gaaatgaaagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataaccttt |
132 |
Q |
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||||||||||| ||||| || |||||||||| || || |||||||||||||||||||| || |||||| ||||||||| ||| | | || |||||||| |
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| T |
27106975 |
gaaatgaaagacgttgtactcataaaaccatcaaaatcaattccttcttgtattctttcactttctacaattgacaatagagaaatctataataaccttg |
27106876 |
T |
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| Q |
133 |
gtcaagctgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagcactctcaa |
223 |
Q |
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| T |
27106875 |
ctcaaactgttcatgtataccgatcaccatcaattaatgattctgattcgagtttc-aacttttgtcatgtattcaaagaagcactttcaa |
27106786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 27064738 - 27064564
Alignment:
| Q |
40 |
aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagc |
139 |
Q |
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|||||||| |||||||||| ||||| || |||| | ||||||||||||||||||| || |||||||||||||||| |||| ||||| || ||| | |
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| T |
27064738 |
aagatgttttgcttgtaaagccatcaaaatccacttcttcttgtattctttctctatcaacacttgacaataaaggtgccaataataacattgcccaaac |
27064639 |
T |
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| Q |
140 |
tgttcatgtataccggccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagc |
215 |
Q |
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| T |
27064638 |
tgttcatgtataccgatcatcatcaattcatgattatgattccagtttc-aacccttgtcatgtattcaaagaagc |
27064564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 27044768 - 27044591
Alignment:
| Q |
40 |
aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaagacaacaattataacctttgtcaagc |
139 |
Q |
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|||||||| ||||||||||||| || ||||||| ||||||||||||||||||||| |||||||| ||||||||| |||| ||||| || ||| |
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| T |
27044768 |
aagatgttttgcttgtaaaaccttcaaagtccactccttcttgtattctttctctatctacactgaacaataaaggtgccaataataacattgcccaaat |
27044669 |
T |
|
| Q |
140 |
tgttcatgtataccg---gccatcaacaattcatgattctgattcgggtttcgaccccttgtcatgtattcaaagaagc |
215 |
Q |
| |
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||||||||||||||| ||||| |||||||||| | |||||| ||||| | |||||||||||||||||||||||| |
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| T |
27044668 |
tgttcatgtataccgatcatcatcagcaattcatgactatgattccagtttc-aacccttgtcatgtattcaaagaagc |
27044591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 27071707 - 27071633
Alignment:
| Q |
40 |
aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaag |
114 |
Q |
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| T |
27071707 |
aagatgttttgcttgtaaaaccatcaaaatccactccatcttgtattctttctctgtcaacacttgacaataaag |
27071633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 27092503 - 27092429
Alignment:
| Q |
40 |
aagatgttgtgcttgtaaaaccatccaagtccattccttcttgtattctttctctgtctacacttgacaataaag |
114 |
Q |
| |
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|||||||| |||||||||| ||||| || |||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
27092503 |
aagatgttttgcttgtaaagccatcaaaatccactccttcttgtattctttctctatcaacacttgacaataaag |
27092429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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