View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0905_low_8 (Length: 488)
Name: NF0905_low_8
Description: NF0905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0905_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 47 - 390
Target Start/End: Complemental strand, 53588135 - 53587795
Alignment:
| Q |
47 |
aatttaagcatttgttcgtcatgcaaactttttggaacatccagagtcattcaaataaactacatttatcannnnnnnnnnnnnnnnnnttaaaatcaaa |
146 |
Q |
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| T |
53588135 |
aatttaagcatttgttcttcatgcaaactttttggaacatccagagtcattcaaataaattacatttatcatgtgtgtcgtgtgtgtgtttaaaatcaaa |
53588036 |
T |
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| Q |
147 |
atcacaggtacatttacaaaataaagttgattcatacatacatttgcacnnnnnnnnnnnnngtaatcatgttattgatatgaaatttcatcgcggttat |
246 |
Q |
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| T |
53588035 |
atcacaggtacatttacaaaataaagttgattcatacatacatttgcactttttttt-----gtaatcatgttattgatatgaaatttcatcgcagttac |
53587941 |
T |
|
| Q |
247 |
gagtgattaatgtttgtcagagaaaatgtaagacatatgag--ttgagttcttttattccaattgtattttcttcatacacaaaattagagatcgagctc |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
53587940 |
gagtgattaatgtttgtcagagaaaatgtaagacatatgtgaattgagttcttttattccaatcgtattttattcatacacaaaattagagatcgagctc |
53587841 |
T |
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| Q |
345 |
ataataacttgtttaaaggataaaaataccttaattacctcatagg |
390 |
Q |
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| T |
53587840 |
ataataacttgtttaaaggataaaaatatcttaatcaccgcatagg |
53587795 |
T |
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