View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_1 (Length: 692)
Name: NF0906_low_1
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Complemental strand, 54395647 - 54395056
Alignment:
| Q |
10 |
gcagagaagtataaggcagaggacgaagaggtgaagaagaaagtggaggcgaagaattcacttgagaattatgcttataatatgaggaatacaataaagg |
109 |
Q |
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| T |
54395647 |
gcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaattatgcttataatatgaggaatacaattaagg |
54395548 |
T |
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| Q |
110 |
atgagaagattggtgggaagttgagtcatgatgataaggagaagattgagaaggctgtggaagatgctatacagtggttggaggggaatcaaatggcgga |
209 |
Q |
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| T |
54395547 |
atgagaagattggtgggaagttgagtcatgaagataaggagaagattgagaaggctgtggaagatgcaatacagtggttggaggggaatcaaatggcgga |
54395448 |
T |
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| Q |
210 |
agtggatgagtttgaggataagcagaaggagttggaaggaatttgtaatcctattattgctaagatgtatcaaggtggtgctggtggagatgtgcctatg |
309 |
Q |
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| T |
54395447 |
agtggatgagtttgaggataagcagaaggagttggaaggaatttgtaatcctattattgctaagatgtatcaaggtggtgctggtggagatgtgcctatg |
54395348 |
T |
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| Q |
310 |
ggagatggtatgcctggtggtggtgg------ctctaatgggacaggctctggagctggacctaagattgaagaggttgactaagtttttgaaacattgg |
403 |
Q |
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| T |
54395347 |
ggagatggtatgcctggtggtggtggtggtgcatctaatgggacaggctctggagctggacctaagattgaagaggttgactaagtttttgaaacattgg |
54395248 |
T |
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| Q |
404 |
ttgtatgtgtatgaaacttgtcttgtgtcctgttaatg-tttagttacagaaggtaggtaggcttgagtgtctaaggttt--tatatgtc-ttttttagt |
499 |
Q |
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| T |
54395247 |
ttgtatgtgtatgaaa----------gtcctgttaatgttttagttacagaaggtaggtaggcttgagtgtctaaggttttatatatgtctttttttagt |
54395158 |
T |
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| Q |
500 |
tttgtgtgatcagtgtaattgagagatgaaataaaatgaatgcaatttaatttctgtcaatttatatcgcttaaatctgatactacctgctaagaggtgg |
599 |
Q |
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| T |
54395157 |
tttgtgtgatcagtgtaattgagagatgaaataaaatgaatgtaatttaatttctgtcaatttatatcgcttaaatctgatactacctgttaagaggtgg |
54395058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 301
Target Start/End: Original strand, 23588713 - 23588965
Alignment:
| Q |
46 |
aagaaagtggaggcgaagaattcacttgagaattatgcttataatatgaggaatacaataaaggatgagaagattggtgggaagttgagtcatgatgata |
145 |
Q |
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|||||||||||||| |||||| |||||||||| ||||| || || |||||||| ||||| || || || ||||||| | ||||||| | |||||||| |
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| T |
23588713 |
aagaaagtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgata |
23588812 |
T |
|
| Q |
146 |
aggagaagattgagaaggctgtggaagatgctatacagtggttggaggggaatcaaatggcggaagtggatgagtttgaggataagcagaaggagttgga |
245 |
Q |
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| T |
23588813 |
agaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctgga |
23588912 |
T |
|
| Q |
246 |
aggaatttgtaatcctattattgctaagatgtatcaaggtggtgctggtggagatg |
301 |
Q |
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| T |
23588913 |
gggcatttgcaaccctatcattgcaaggatgtatcaa---ggtgctggtggagatg |
23588965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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