View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_10 (Length: 473)
Name: NF0906_low_10
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 81 - 444
Target Start/End: Original strand, 10121472 - 10121835
Alignment:
| Q |
81 |
atgaagcagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctggtcatgggagccatacagcttccacagcagcaggacgata |
180 |
Q |
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| T |
10121472 |
atgaaacagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctggtcatgggagccatacagcttccacagcagcaggacgata |
10121571 |
T |
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| Q |
181 |
cgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatggctaggatttctgtttacaaaacttgttgggattcaggt |
280 |
Q |
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| T |
10121572 |
cgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatggctaggatttctgtttacaaaacttgttgggattcaggt |
10121671 |
T |
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| Q |
281 |
tgctatgatgtggacttgttagctgcctttgatgatgccataagagatggtgttcacattatatctttatctcttggtcctgaatctcctcaaggtgact |
380 |
Q |
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| T |
10121672 |
tgctatgatgtggacttgttagctgcctttgatgatgccataagagatggtgttcacattatatctttatctcttggtcctgaatctcctcaaggtgact |
10121771 |
T |
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| Q |
381 |
atttcaatgatgccatatctgttgggtctttccatgctgctaggcacggagtacttgtagtagc |
444 |
Q |
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| T |
10121772 |
atttcaatgatgccatatctgttgggtctttccatgctgctagacacggagtacttgtagtagc |
10121835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 81 - 420
Target Start/End: Complemental strand, 30628605 - 30628266
Alignment:
| Q |
81 |
atgaagcagaagaagggtcagacaaaaaagtctctttcagatctgcaagagacagctctggtcatgggagccatacagcttccacagcagcaggacgata |
180 |
Q |
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|||||||||| |||| |||| | |||| |||| |||||||| || || |||||| | |||||||| |||||||||||||| | ||| ||||| |||| |
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| T |
30628605 |
atgaagcagaggaagagtcaaatgcaaaaatctcattcagatcagctagggacagcacaggtcatggtagccatacagcttcaatagctgcagggagata |
30628506 |
T |
|
| Q |
181 |
cgtctcaaacatgaattataatgggttagcagcaggaaatgctaggggaggtgcaccaatggctaggatttctgtttacaaaacttgttgggattcaggt |
280 |
Q |
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|| ||||||||||||||| || ||||| ||| ||| |||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||| |
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| T |
30628505 |
tgtacaaaacatgaattataaaggactagcaagtggaggtgcaaggggaggtgcacctatggctagaattgctgtgtacaaaacatgttgggattcaggt |
30628406 |
T |
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| Q |
281 |
tgctatgatgtggacttgttagctgcctttgatgatgccataagagatggtgttcacattatatctttatctcttggtcctgaatctcctcaaggtgact |
380 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| | ||| ||||||||||| || |||| || ||||| || | |
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| T |
30628405 |
tgctatgatgtggacttgctagctgcatttgatgatgctataagagatggtgttcacattttgtctctatctcttggtgctcaatcaccacaaggagatt |
30628306 |
T |
|
| Q |
381 |
atttcaatgatgccatatctgttgggtctttccatgctgc |
420 |
Q |
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||||||||||||| |||||| | ||||| || |||||||| |
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| T |
30628305 |
atttcaatgatgctatatctatagggtcatttcatgctgc |
30628266 |
T |
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