View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_12 (Length: 456)
Name: NF0906_low_12
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 12634407 - 12634846
Alignment:
| Q |
17 |
tacacataccaaaagccttattaacaaaacaactctcgctacatcagaccaaaataggcgcggaaattctattctgttacaccagaaaagtgacagttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12634407 |
tacacataccaaaagccttattaacaaaacaactctcgctacattagaccaaaataggcgcggaaattctattctgttacaccagaaaaatgacagttga |
12634506 |
T |
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| Q |
117 |
atcggcaacaaaaccataccgaaaacgnnnnnnntggcctaagaaatatgtaacaggaagtcagcaaaacatgacaaagagaaagaagtagccgtcttaa |
216 |
Q |
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| T |
12634507 |
atcggcaacaaaaccataccgaaaacgaaaaaaatggcctaagaaatatgtaacaggaagtcagcaaaacatgacaaagagaaagaagtagccgtcttaa |
12634606 |
T |
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| Q |
217 |
atgaaaaaagtgcaggtgctcacaccagaaaaactctccaattctttagttttctactaaagaggagtgggactcttgatttgcagtcttgaatattcat |
316 |
Q |
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| T |
12634607 |
atgaaaaaagtgcaggtgctcacaccagaaaaattctccaattctttagttttctactaaagaggagtgggactcttgatttgcagtcttgaatattcat |
12634706 |
T |
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| Q |
317 |
aagaaatagaataaaaatgtccaaaatgttcaaaagaaaatgtattttgtaactcacaccaatatatggtataagtccttgagctttttaagggtacaca |
416 |
Q |
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| T |
12634707 |
aagaaatagaataaaaatgtccaaaatgttcaaaagaaaatgtattttgtaactcacaccaatatatggtataagtccttgagctttttaagggtacaca |
12634806 |
T |
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| Q |
417 |
aaaggaagggagactaaacttgaacaaattaaaagctcat |
456 |
Q |
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| T |
12634807 |
aaaggaagggagactaaacttgaacaaattaaaagctcat |
12634846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 18918619 - 18918273
Alignment:
| Q |
17 |
tacacataccaaaagccttattaacaaaacaactctcgctacatcagaccaaaataggcgcggaaattctattctgttacaccagaaaagtgacagttga |
116 |
Q |
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|||||| ||||||| ||| |||||||| |||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| |||||| |
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| T |
18918619 |
tacacacaccaaaatttttactaacaaaaaaactctagctacatcagaccaaaacaggcgcggaaattttattttgttacaccagaaaaatgaaagttga |
18918520 |
T |
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| Q |
117 |
atcggcaacaaaaccataccgaaaacgnnnnnnntggcctaagaaatatgtaacaggaagtcagcaaaacatgacaaagagaaagaagtagccgtcttaa |
216 |
Q |
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| T |
18918519 |
aatggcaacaaaaccataccgaaagc-taaaaaatggcctaagaaatatgtaacagcaagtcagtaaaacatgacaatga------agtagatgtcttaa |
18918427 |
T |
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| Q |
217 |
atgaaaaaagtgcaggtgctcacaccagaaaaactctccaattctttagttttctactaaagaggagtgggactcttgatttgcagtcttgaatattcat |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18918426 |
atgaaaaaagtgcaggtgctcacaccagaaaaattctccaattctttagttttctactaaagagaagtgggactcttgatttgcagtcttgaatattcat |
18918327 |
T |
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| Q |
317 |
aagaaatagaataaaaatgtccaaaatgttcaaaagaaaatgtattttgtaact |
370 |
Q |
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| T |
18918326 |
aagaaatagaataaaaatgtccaaaatgttcaaaagaaaatgtatttcgtaact |
18918273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 18918267 - 18918209
Alignment:
| Q |
398 |
agctttttaagggtacacaaaaggaagggagactaaacttgaacaaattaaaagctcat |
456 |
Q |
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| T |
18918267 |
agctttttaagggtacacaaaaggaagggtaactaaacttgaacatattagaagttcat |
18918209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 48907122 - 48907225
Alignment:
| Q |
251 |
tctccaattctttagttttctactaaagaggagtgggactcttgatttgcagtcttgaatattcataagaaatagaataaaaatgtccaaaatgttcaaa |
350 |
Q |
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| T |
48907122 |
tctccaattctttaatttcctactaaacatgagtgggactcttgatatgcactcttaaatattcataacaaataaaataaaaatg-ccaaaatgttcaaa |
48907220 |
T |
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| Q |
351 |
agaaa |
355 |
Q |
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||||| |
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| T |
48907221 |
agaaa |
48907225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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