View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_18 (Length: 398)
Name: NF0906_low_18
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 36293696 - 36293313
Alignment:
| Q |
1 |
caaatgaaaaattcattcaataaatggcctcaagttgttgtctaaaaacttgcttgaatatcaaaagaatataacatgtgacattttttatgagatctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293696 |
caaatgaaaaattcattcaataaatggcctcaagttgttgtctaaaaacttgcttgaatatcaaaagaatataacatgtgacattttttatgagatctaa |
36293597 |
T |
|
| Q |
101 |
acagcaacaaaaattataacaattcagaatagtaaaatgacctggctttcctccattcagaattgcactttcagttggttctacaccatacacctannnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293596 |
acagcaacaaaaattataacaattcagaatagtaaaatgacctggctttcctccattcagaattgcactttcagttggttctacaccatacacctagggg |
36293497 |
T |
|
| Q |
201 |
nnnaaatttacatagatcataaagttagcataaatatatagcatgaactaagaaaacttgttcacatattcactcccaacacaaaaagtatacaaggtaa |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293496 |
gggaaatttacatagatcataaag----------tatatagcatgaactaagaaaacttgttcacatattcactcccaacacaaaaagtatacaaggtaa |
36293407 |
T |
|
| Q |
301 |
acaaattaaccttgatatctaagtttctctccttgaggaacttcccagcacctgttattgttcccccagttcctatccctgcaaccaaagcatc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293406 |
acaaattaaccttgatatctaagtttctctccttgaggaacttcccagcacctgttattgttcccccagttcctatccctgcaaccaaagcatc |
36293313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 36287853 - 36287768
Alignment:
| Q |
309 |
accttgatatctaagtttctctccttgaggaacttcccagcacctgttattgttcccccagttcctatccctgcaaccaaagcatc |
394 |
Q |
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| T |
36287853 |
accttgatctctgggtttttctccttaaggaacttcccaacacctgttattgttcctccagttcctatccctgcaaccaaagcatc |
36287768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 36282056 - 36281993
Alignment:
| Q |
133 |
taaaatgacctggctttcctccattcagaattgcactttcagttggttctacaccatacaccta |
196 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36282056 |
taaaatcacctggctttcctccattcagaactgcactttcagttggttctacaccatacaccta |
36281993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 36281913 - 36281828
Alignment:
| Q |
309 |
accttgatatctaagtttctctccttgaggaacttcccagcacctgttattgttcccccagttcctatccctgcaaccaaagcatc |
394 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
36281913 |
accttgatatctggatttttctccttaaggaacttcccagtacctgttactgttcccccagttcctattcctgcaaccaaagcatc |
36281828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 36287985 - 36287890
Alignment:
| Q |
140 |
acctggctttcctccattcagaattgcactttcagttggttctacaccatacacctannnnnnnaaatttacatagatcataaagttagcataaat |
235 |
Q |
| |
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||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
36287985 |
acctgactttcctccattcagaactggactttcagttggttcaacaccatacacctatagggggaaagcaacataaatcataaagttagcataaat |
36287890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 27289075 - 27289116
Alignment:
| Q |
323 |
gtttctctccttgaggaacttcccagcacctgttattgttcc |
364 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
27289075 |
gtttctctccttgaggaatttccctgcacctgttattgttcc |
27289116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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