View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_2 (Length: 658)
Name: NF0906_low_2
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 104 - 481
Target Start/End: Original strand, 14130439 - 14130807
Alignment:
| Q |
104 |
agtagtacttgagagtgaacacagaccataactgtctctacctctaccatactttgattaagagaggaccactttgcactctgatattagacatgttttt |
203 |
Q |
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| T |
14130439 |
agtagtacttgagagttaacacagaccataactgtctct------accatactttgattaggagaggaccactttccactctgatattagacatgttttt |
14130532 |
T |
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| Q |
204 |
aaaatatgaaaatggccttatatgttcttttcttcaccattgcaacgacaaaaaatgtagaagagcataagataaaagagcctgataaaacaaatctaga |
303 |
Q |
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| T |
14130533 |
aaaatatgaaaatggccttatatgttcttttcttcaccattgcaacgacaataaatgtagaagagcataagataaaagagcctgataaaacaaatctaga |
14130632 |
T |
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| Q |
304 |
agaccaagaattctttattgactttcatac-nnnnnnntaaaaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaatgtacgta |
402 |
Q |
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| T |
14130633 |
agaccaagaattctttattgactttcatacaaaaaaaataaaaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaat----gta |
14130728 |
T |
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| Q |
403 |
gaagatctgaagatggaaaagccaaccaaaccctagtgcaattaaatatttatccccataacattacagatgataccgt |
481 |
Q |
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| T |
14130729 |
gaagatctgaagatggaaaagccaaccaaaccctagtgcaattaaatatttatccccataacattacagatgataccgt |
14130807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 555 - 649
Target Start/End: Original strand, 14130823 - 14130921
Alignment:
| Q |
555 |
aatctcatcaccacctccatattttaagatgaattttaattatcatagttagctccttaatcctttaatcttagctct----gccccttccctctctgc |
649 |
Q |
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| T |
14130823 |
aatctcatcaccacctccatattttaaaatgaattttaattatcatagttagctccttaatcctttaatcttagctctgctggccccttccctctctgc |
14130921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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