View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_20 (Length: 375)
Name: NF0906_low_20
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 5805973 - 5805896
Alignment:
| Q |
298 |
ctgcagaattttccaagaatttattatacagctaagatacgtgaggattttgcttcaaaactgtttcctgtctatatt |
375 |
Q |
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| T |
5805973 |
ctgcagaattttccaagaatttattagacagctaagatatgtgaggattttgcttcaaaactgtttcctgtctatatt |
5805896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 5806084 - 5806029
Alignment:
| Q |
187 |
cggttcattaacaaatgttgtgacttcaattcaaaatggtccatattcaattagca |
242 |
Q |
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| T |
5806084 |
cggttcattaacaaatgttgtgacttcaattcaaaatggtccatattcaattagca |
5806029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 39488893 - 39488937
Alignment:
| Q |
70 |
ttcattgttgctgactgtttagatattttgtttagtttattaaat |
114 |
Q |
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| T |
39488893 |
ttcattattgttgactgtttagacattttggttagtttattaaat |
39488937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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