View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_21 (Length: 352)
Name: NF0906_low_21
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 4421978 - 4421729
Alignment:
| Q |
30 |
ccttgctattcgtagtccctttctttctctttgtattaaccggaataaaaggagtgtcattaacagcagccagagccatccaattattcataaaatcaac |
129 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4421978 |
ccttgctattcgtagtccctttctttttctttgtattaaccggaataaaaggagtgtcgctaacagcagccagagccatccaattattcataaaatcaac |
4421879 |
T |
|
| Q |
130 |
ctctttctgtaaagtaggatctacatgagcatcatatgcagcaacaataccactaacatccaaagtcttgtttgtgactggtgataatatagattcatgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4421878 |
ctctttctgtaaagtaggatctacatgagcatcatatgcagcaacaataccactaacatccaaagtcttgtttgtgactggtgataatatagattcatgt |
4421779 |
T |
|
| Q |
230 |
tcatggataacctcaagttcattcctaatcacatcatcggtaatattatt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4421778 |
tcatggataacctcaagttcattcctaatcacatcatcggtaatattatt |
4421729 |
T |
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