View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_23 (Length: 343)
Name: NF0906_low_23
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 36292972 - 36293291
Alignment:
| Q |
7 |
gcagcacagagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctga |
106 |
Q |
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| T |
36292972 |
gcagcactgagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctga |
36293071 |
T |
|
| Q |
107 |
cagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293072 |
cagaccctgccaaaggagttgacggagtttttgaaaaggcatacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgt |
36293171 |
T |
|
| Q |
207 |
caatccaaaggtattttcataattcatattgcctaatttggttgataggttgaaaaaagtttagtcgattaatttgtcaatttttagacgcattatgaga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36293172 |
caatccaaaggtattttcataattcatattgcctaatttggttgataggttgaaaaaagtttagtcgattaatttgtcaatttttagactcattatgaga |
36293271 |
T |
|
| Q |
307 |
ccacaggccctgagatttgg |
326 |
Q |
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|||||||||||||||||||| |
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| T |
36293272 |
ccacaggccctgagatttgg |
36293291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 6 - 326
Target Start/End: Original strand, 36281483 - 36281806
Alignment:
| Q |
6 |
agcagcacagagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctg |
105 |
Q |
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| T |
36281483 |
agcagcaatgaggggctataaacttttagtgactatgccagctactatgagtcttgaaagaaaaattatactgcgagctttcggagccgaggtatatttg |
36281582 |
T |
|
| Q |
106 |
acagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctg |
205 |
Q |
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|||||||||||||||||| |||| || |||||| | || ||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| |
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| T |
36281583 |
acagaccctgccaaaggaattgatggtgtttttcagaaagcagacgagctattagcgaagacgcctaatagttataagctcaatcagtttgaaaactctg |
36281682 |
T |
|
| Q |
206 |
tcaatccaaaggtattttcataattcatattgcctaatttggttgataggttg--aaaaaagtttagtcgattaatttgtcaat-ttttagacgcattat |
302 |
Q |
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|||||||||||| || ||| | |||||||| |||||||||||| | ||| | |||||| | || | ||||||||||| | ||||||| ||||| |
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| T |
36281683 |
ccaatccaaaggtgttatcacagttcatattttctaatttggttgtttggtgggaaaaaaattgtaaccaattaatttgtcgttgttttagattcattac |
36281782 |
T |
|
| Q |
303 |
gagaccacaggccctgagatttgg |
326 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
36281783 |
gagaccactggccctgagatttgg |
36281806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 36287422 - 36287665
Alignment:
| Q |
6 |
agcagcacagagaggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctg |
105 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | |||||| || ||||||||||||||||| |||| || | | ||||| ||||| ||||||||||| |
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| T |
36287422 |
agcagcaatgaggggctataaacttttagtgtcattgccattttatgtgagtcttgagagaagaattctactcagagcttttggagctgaggtatatcta |
36287521 |
T |
|
| Q |
106 |
acagaccctgccaaaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctg |
205 |
Q |
| |
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||||| |||||||||||| | || || |||||||| || || || |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
36287522 |
acagatcctgccaaaggaatagatggtgtttttgagaaagcggaagagctattagagaagacgcctaatagttatatgttcaatcaatttgaaaatcctg |
36287621 |
T |
|
| Q |
206 |
tcaatccaaaggtattttcataattcatattgcctaatttggtt |
249 |
Q |
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|||||| |||||||| |||| ||| ||||| |||||| ||||| |
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| T |
36287622 |
ccaatccgaaggtattgtcattatttatatttcctaatatggtt |
36287665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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