View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_32 (Length: 316)
Name: NF0906_low_32
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 8958068 - 8957870
Alignment:
| Q |
68 |
aggagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
167 |
Q |
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| T |
8958068 |
aggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
8957969 |
T |
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| Q |
168 |
gttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatg |
266 |
Q |
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| T |
8957968 |
gttttcatgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatg |
8957870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 8946009 - 8946129
Alignment:
| Q |
78 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
177 |
Q |
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| T |
8946009 |
atgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttga |
8946108 |
T |
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| Q |
178 |
aagacatgcttgcttttgaag |
198 |
Q |
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| T |
8946109 |
aagacatatttgctattgaag |
8946129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 8963072 - 8962945
Alignment:
| Q |
78 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
177 |
Q |
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| T |
8963072 |
atgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttga |
8962973 |
T |
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| Q |
178 |
aagacatgcttgcttttgaagtagagtt |
205 |
Q |
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| T |
8962972 |
aagacattttttctattgaactagagtt |
8962945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 34962792 - 34962919
Alignment:
| Q |
78 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
177 |
Q |
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|||||||||||||| | | |||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
34962792 |
atgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttagttccaaaaactgttttcatga |
34962891 |
T |
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| Q |
178 |
aagacatgcttgcttttgaagtagagtt |
205 |
Q |
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| T |
34962892 |
aagacatgcttgcaattgaagtagagtt |
34962919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 250
Target Start/End: Original strand, 21687162 - 21687341
Alignment:
| Q |
68 |
aggagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
167 |
Q |
| |
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|||||||| ||||||||||||||| | |||||||||||||||||| || || ||||| |||||| || |||||||||| || ||||| || ||| || |
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| T |
21687162 |
aggagcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaaagct |
21687261 |
T |
|
| Q |
168 |
gttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccatt |
250 |
Q |
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|||||||||||||||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||||||| |
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| T |
21687262 |
gttttcttgaaagacatgtttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatt |
21687341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 19375878 - 19375998
Alignment:
| Q |
70 |
gagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgt |
169 |
Q |
| |
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|||||| |||||| |||||||| | | |||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| ||| |
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| T |
19375878 |
gagcagtgatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgt |
19375977 |
T |
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| Q |
170 |
tttcttgaaagacatgcttgc |
190 |
Q |
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| T |
19375978 |
tttcttgaaagacatgcttgc |
19375998 |
T |
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